Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 0.0e+00 2003.8 1032 100.0
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1954.9 1017 98.9
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1613.2 1014 84.6
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1188.7 1037 63.9
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1166.8 1020 62.5
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1149.0 1028 62.5
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1147.5 1033 62.1
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1144.0 1044 62.2
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 0.0e+00 1126.7 1019 63.1
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1126.7 1054 60.8
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1108.2 1037 60.7
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1106.7 999 61.7
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1103.2 1018 59.7
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 0.0e+00 1102.4 876 67.5
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1095.9 1082 58.4
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1090.5 1014 60.2
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1089.3 1108 57.0
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1081.6 650 86.5
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1080.5 1016 60.2
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1077.8 1001 59.8
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1075.5 1021 59.6
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 2.1e-311 1072.4 867 66.8
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 4.1e-310 1068.1 1001 58.5
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 2.9e-308 1062.0 1014 59.2
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 2.7e-306 1055.4 1022 57.6
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 3.6e-306 1055.0 1022 57.6
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 1.4e-305 1053.1 1011 58.9
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 1.4e-305 1053.1 969 60.6
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 5.2e-305 1051.2 882 63.6
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 6.8e-305 1050.8 1049 56.3
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 1.2e-304 1050.0 1016 59.0
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 1.3e-303 1046.6 1059 57.2
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 1.7e-303 1046.2 591 90.2
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.1e-302 1043.5 1018 58.7
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 1.8e-302 1042.7 703 74.7
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 5.4e-302 1041.2 1041 57.5
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.0e-301 1039.3 1018 58.2
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 3.5e-301 1038.5 1008 58.9
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 2.2e-300 1035.8 1067 56.4
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 2.5e-299 1032.3 1006 57.6
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 7.2e-299 1030.8 994 58.1
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 1.2e-298 1030.0 993 58.2
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 6.1e-298 1027.7 1002 57.5
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 2.8e-295 1018.8 704 72.3
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 1.1e-294 1016.9 994 57.7
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 5.4e-294 1014.6 999 56.9
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 1.2e-293 1013.4 1015 56.5
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 1.2e-293 1013.4 1014 56.8
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 1.1e-291 1006.9 995 56.9
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 1.1e-291 1006.9 996 56.3
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 1.1e-291 1006.9 699 73.8
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 1.1e-291 1006.9 999 56.7
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 1.9e-291 1006.1 1014 55.8
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 7.2e-291 1004.2 1013 55.4
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 1.6e-290 1003.0 994 56.8
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 8.0e-290 1000.7 998 56.4
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 2.3e-289 999.2 1046 54.4
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 1.2e-288 996.9 999 55.6
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 4.4e-288 995.0 997 55.9
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 7.5e-288 994.2 1024 55.5
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 2.2e-287 992.6 1064 56.1
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 6.4e-287 991.1 996 55.5
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 1.2e-285 986.9 1024 55.6
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 3.3e-283 978.8 1044 54.3
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 1.6e-282 976.5 1039 53.8
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 1.0e-281 973.8 1012 54.1
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.3e-281 972.6 1044 55.1
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 2.6e-280 969.1 715 70.8
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 1.9e-278 963.0 716 68.0
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 4.1e-278 961.8 1058 52.6
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 6.0e-277 958.0 1010 55.8
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 5.6e-275 951.4 658 73.6
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 7.3e-275 951.0 937 57.7
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 2.0e-272 943.0 1020 53.5
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 4.9e-271 938.3 703 68.1
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 3.0e-268 929.1 949 55.6
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 1.4e-265 920.2 675 71.1
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 8.4e-263 911.0 701 66.0
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 1.1e-262 910.6 882 55.9
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 1.4e-262 910.2 883 55.9
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 6.0e-261 904.8 842 57.8
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 6.0e-261 904.8 966 52.7
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 7.8e-261 904.4 606 75.9
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 3.3e-259 899.0 714 67.2
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 2.9e-255 885.9 835 58.4
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 2.3e-236 823.2 999 50.4
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 3.8e-231 805.8 1016 49.6
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.3e-228 797.3 827 52.2
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 7.4e-227 791.6 1090 45.0
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.0e-220 769.6 706 56.5
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.7e-219 765.4 694 57.8
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.1e-212 742.3 696 57.2
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.6e-211 740.0 1102 45.6
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 8.2e-210 734.9 411 91.7
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 1.9e-206 723.8 1007 45.4
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 2.2e-199 700.3 782 52.7
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 9.7e-195 684.9 784 52.3
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 8.3e-186 655.2 480 69.6
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 1.1e-185 654.8 480 69.6
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 3.5e-184 649.8 476 68.9
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.0e-167 595.1 390 81.8
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 2.3e-164 583.9 425 72.0
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 4.6e-160 569.7 405 71.6
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 4.0e-156 556.6 348 85.3
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 2.4e-137 494.2 456 64.7
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.2e-121 440.7 486 47.9
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 1.8e-116 424.9 287 74.6
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 8.7e-111 406.0 463 51.8
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.8e-108 398.3 280 71.8
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 2.4e-92 344.7 381 47.0
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 3.0e-87 327.8 529 38.9
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 5.7e-86 323.6 277 62.8
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 2.1e-80 305.1 206 76.7
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 3.6e-80 304.3 161 91.3
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.7e-72 277.3 211 67.3
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.3e-69 269.2 523 36.7
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 6.1e-64 250.4 184 70.1
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 1.8e-63 248.8 697 29.4
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.6e-62 245.0 158 74.7
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 1.1e-60 239.6 224 62.5
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.6e-51 209.1 772 26.3
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.9e-49 202.2 737 27.0
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 1.9e-49 202.2 165 66.7
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 1.1e-47 196.4 741 27.7
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 3.1e-47 194.9 688 27.0
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.9e-45 188.3 858 25.2
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.9e-45 188.3 767 25.4
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 7.3e-41 173.7 165 55.8
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 6.8e-39 167.2 150 58.7
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 2.6e-38 165.2 170 53.5
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.4e-38 164.9 255 42.0
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.1e-35 155.6 157 54.1
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 5.1e-34 151.0 492 31.3
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.1e-33 149.8 830 23.5
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 2.9e-29 135.2 782 24.2
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.8e-29 134.8 755 24.5
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-26 126.7 295 31.2
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 3.0e-26 125.2 114 60.5
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 5.1e-26 124.4 481 25.6
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 3.4e-22 111.7 75 70.7
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 6.4e-21 107.5 69 79.7
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 2.4e-20 105.5 73 72.6
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 3.2e-20 105.1 82 59.8
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.5e-19 101.7 264 27.7
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 3.0e-18 98.6 697 25.0
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 4.5e-14 84.7 353 29.7
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.2e-13 82.4 350 24.6
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.2e-12 78.6 97 46.4
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.2e-12 78.6 432 24.3
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 5.6e-09 67.8 201 32.8
CBR_g26524 Chara braunii HOM05D002705 ORTHO05D004955 8.1e-08 63.9 95 41.1
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 4.5e-06 58.2 73 49.3
SMO115G0155 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.8e-06 57.8 69 37.7
Pp3s70_20 Physcomitrium patens HOM05D002705 ORTHO05D313936 9.9e-06 57.0 730 20.8


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