Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 1.8e-157 559.7 383 100.0
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 2.0e-145 519.6 383 94.5
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 2.5e-140 502.7 383 93.5
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 3.8e-128 462.2 383 86.4
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.4e-125 453.8 372 85.8
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 2.4e-122 443.0 376 84.8
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.2e-118 430.6 352 86.9
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 5.7e-100 368.6 383 74.2
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 3.5e-97 359.4 372 73.7
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 2.3e-96 356.7 367 59.4
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.9e-95 353.6 367 73.6
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 5.6e-95 352.1 366 74.3
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 2.1e-94 350.1 366 74.0
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 2.8e-94 349.7 367 71.7
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 3.6e-94 349.4 366 74.0
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 1.4e-93 347.4 372 72.8
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 1.8e-93 347.1 372 72.0
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 1.8e-93 347.1 366 58.2
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 3.0e-93 346.3 365 72.9
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 6.8e-93 345.1 355 74.4
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 2.0e-92 343.6 374 62.3
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 3.4e-92 342.8 366 73.2
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 4.4e-92 342.4 367 73.0
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 5.7e-92 342.0 385 70.4
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 1.3e-91 340.9 373 71.6
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 1.3e-91 340.9 400 57.8
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 1.7e-91 340.5 354 72.9
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 2.2e-91 340.1 376 72.3
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.8e-90 337.0 374 72.5
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.8e-90 337.0 374 72.5
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 4.1e-90 335.9 373 61.7
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 7.0e-90 335.1 373 69.4
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 7.0e-90 335.1 376 72.9
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 7.0e-90 335.1 387 70.0
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 1.6e-89 334.0 386 69.9
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 3.5e-89 332.8 374 71.4
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 3.5e-89 332.8 373 71.0
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 4.6e-89 332.4 375 70.1
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 5.9e-89 332.0 372 70.2
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.0e-88 331.3 389 70.4
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.7e-88 330.5 392 68.6
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 3.0e-88 329.7 379 70.4
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.0e-88 329.7 379 70.4
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.9e-88 329.3 383 60.1
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 8.6e-88 328.2 375 70.7
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 1.9e-87 327.0 387 69.3
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 3.3e-87 326.2 375 71.2
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 4.3e-87 325.9 384 69.5
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 4.3e-87 325.9 367 72.2
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 7.3e-87 325.1 372 70.4
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.6e-86 322.8 373 68.6
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 1.8e-85 320.5 374 70.1
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 1.8e-85 320.5 372 70.2
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 5.2e-85 318.9 384 68.2
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 9.8e-84 314.7 390 67.7
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 1.3e-83 314.3 373 70.2
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 1.7e-83 313.9 373 70.2
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 2.2e-83 313.5 375 70.9
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 4.9e-83 312.4 384 68.0
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.9e-82 310.5 368 68.8
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 4.1e-82 309.3 384 67.7
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 4.1e-82 309.3 350 72.6
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 5.0e-80 302.4 373 67.8
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 1.2e-78 297.7 375 66.7
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 4.0e-77 292.7 371 66.0
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 8.9e-77 291.6 387 66.1
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 1.2e-76 291.2 372 67.2
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 5.8e-76 288.9 371 65.8
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 5.8e-76 288.9 385 64.7
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 3.7e-75 286.2 371 65.5
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 8.3e-75 285.0 344 69.8
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 1.4e-74 284.3 384 64.1
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 4.1e-74 282.7 496 39.1
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 5.4e-74 282.3 345 69.6
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 7.1e-74 282.0 373 65.7
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 9.2e-74 281.6 189 82.0
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 3.5e-73 279.6 377 63.7
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 7.8e-73 278.5 373 64.1
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 1.3e-72 277.7 374 63.1
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 2.3e-72 276.9 377 63.4
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 2.3e-72 276.9 377 63.4
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 6.6e-72 275.4 376 64.1
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 5.6e-71 272.3 379 63.1
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 7.3e-71 271.9 352 67.9
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.2e-70 271.2 374 67.9
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 1.1e-69 268.1 381 63.0
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 4.0e-69 266.2 196 79.1
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 4.0e-69 266.2 383 62.1
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 4.0e-69 266.2 381 44.4
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 6.8e-69 265.4 386 61.7
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 2.0e-68 263.8 375 64.0
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 9.9e-68 261.5 385 62.1
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.3e-67 261.2 375 63.2
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 1.7e-67 260.8 376 62.5
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 2.9e-67 260.0 384 62.2
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 2.4e-66 256.9 376 61.2
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 3.2e-66 256.5 382 61.3
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 5.4e-66 255.8 380 60.8
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 9.2e-66 255.0 318 70.4
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 2.7e-65 253.4 384 53.6
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 7.8e-65 251.9 311 71.7
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.7e-64 250.8 325 56.9
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 2.3e-64 250.4 378 54.0
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 5.1e-64 249.2 343 65.3
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 9.6e-63 245.0 289 73.7
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 1.4e-58 231.1 313 69.0
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 2.7e-57 226.9 378 58.2
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 7.8e-57 225.3 270 73.3
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.6e-54 217.6 379 57.0
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 1.8e-53 214.2 356 61.0
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 3.1e-53 213.4 323 65.9
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 2.6e-52 210.3 315 64.8
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 4.9e-51 206.1 353 60.9
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 9.3e-50 201.8 185 58.9
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.3e-46 191.4 348 58.0
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 1.5e-44 184.5 311 62.1
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 1.4e-42 177.9 174 57.5
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.6e-41 174.5 127 81.1
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 4.6e-41 172.9 363 53.2
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.3e-40 170.6 133 78.2
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 3.0e-40 170.2 158 62.0
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 1.1e-39 168.3 133 77.4
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 1.9e-39 167.5 298 60.7
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 2.5e-39 167.2 387 49.6
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 9.6e-39 165.2 301 59.5
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 2.6e-28 130.6 332 53.6
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 3.4e-28 130.2 109 72.5
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.4e-26 124.8 128 63.3
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 7.2e-26 122.5 250 60.8
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 4.6e-25 119.8 384 50.3
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.5e-23 114.0 95 62.1
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 7.4e-23 112.5 247 61.1
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 6.1e-17 92.8 237 52.7
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 1.7e-14 84.7 84 75.0
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 3.7e-14 83.6 59 67.8
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 2.4e-13 80.9 55 70.9
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.2e-12 78.6 55 69.1


User provided reference genes

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