Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.9e-57 224.6 112 100.0
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.4e-38 162.9 111 74.8
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 1.5e-29 132.9 196 45.4
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.6e-21 105.5 168 42.3
Nitab4.5_0010033g0070 Nicotiana tabacum HOM05D001987 ORTHO05D004018 7.7e-21 104.0 53 92.5
Solyc00g500100.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.7e-21 104.0 53 92.5
Solyc00g500117.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.7e-21 104.0 53 92.5
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.7e-21 104.0 53 92.5
Solyc00g500274.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.7e-21 104.0 53 92.5
Solyc00g500309.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.7e-21 104.0 53 92.5
Solyc09g015860.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.7e-21 104.0 53 92.5
Sopen05g027050 Solanum pennellii HOM05D001987 ORTHO05D004018 7.7e-21 104.0 53 92.5
PGSC0003DMG400013869 Solanum tuberosum HOM05D001987 ORTHO05D006514 7.7e-21 104.0 53 92.5
Solyc05g045780.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 2.2e-20 102.4 53 92.5
SalBow1G3504 Salvia bowleyana HOM05D001987 ORTHO05D006514 3.8e-20 101.7 53 90.6
SalBow1G4210 Salvia bowleyana HOM05D001987 ORTHO05D006514 3.8e-20 101.7 53 90.6
SGA_v2.0_scaffold255G45472 Striga asiatica HOM05D001987 ORTHO05D006514 3.8e-20 101.7 53 90.6
PGSC0003DMG400042640 Solanum tuberosum HOM05D001987 ORTHO05D004018 6.5e-20 100.9 53 88.7
PGSC0003DMG400030936 Solanum tuberosum HOM05D001987 ORTHO05D004018 8.5e-20 100.5 53 88.7
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-19 100.1 58 87.9
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-19 100.1 58 87.9
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-19 100.1 58 87.9
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-19 100.1 58 87.9
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-19 100.1 58 87.9
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-19 100.1 58 87.9
unitig_87.g28029 Utricularia gibba HOM05D001987 ORTHO05D006514 1.1e-19 100.1 52 90.4
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 1.9e-19 99.4 58 87.9
Actinidia34925 Actinidia chinensis HOM05D001987 ORTHO05D006514 2.5e-19 99.0 53 88.7
Lsat_1_v5_gn_0_38040 Lactuca sativa HOM05D001987 ORTHO05D006514 2.5e-19 99.0 53 88.7
SabraMtG0007200 Salix brachista HOM05D001987 ORTHO05D004018 2.5e-19 99.0 53 88.7
Ca_30750_v3 Cicer arietinum L. HOM05D001987 ORTHO05D006514 3.2e-19 98.6 53 86.8
LjContig00315g0000313 Lotus japonicus HOM05D001987 ORTHO05D006514 3.2e-19 98.6 53 86.8
Lalb_Chr00c21g0405751 Lupinus albus HOM05D001987 ORTHO05D006514 3.2e-19 98.6 53 86.8
Lalb_Chr00c24g0407071 Lupinus albus HOM05D001987 ORTHO05D006514 3.2e-19 98.6 53 86.8
Lalb_Chr11g0070091 Lupinus albus HOM05D001987 ORTHO05D006514 3.2e-19 98.6 53 86.8
SGA_v2.0_scaffold339G49282 Striga asiatica HOM05D001987 ORTHO05D006514 3.2e-19 98.6 72 72.2
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 4.2e-19 98.2 58 86.2
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 4.2e-19 98.2 58 86.2
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 9.4e-19 97.1 58 84.5
Aqoxy4G01609 Aquilegia oxysepala HOM05D001987 ORTHO05D004018 1.6e-18 96.3 53 86.8
Cfa023008 Carpinus fangiana HOM05D001987 ORTHO05D006514 1.6e-18 96.3 53 86.8
CsaV3_UNG208600 Cucumis sativus L. HOM05D001987 ORTHO05D006514 1.6e-18 96.3 53 86.8
Dinv06676 Davidia involucrata HOM05D001987 ORTHO05D006514 1.6e-18 96.3 53 86.8
HanXRQChr01g0013351 Helianthus annuus HOM05D001987 ORTHO05D004018 1.6e-18 96.3 53 86.8
HanXRQChr16g0504311 Helianthus annuus HOM05D001987 ORTHO05D006514 1.6e-18 96.3 53 86.8
HanXRQMTg0579601 Helianthus annuus HOM05D001987 ORTHO05D006514 1.6e-18 96.3 53 86.8
MBI05_g05348_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 1.6e-18 96.3 53 86.8
QL07p023375 Quercus lobata HOM05D001987 ORTHO05D004018 1.6e-18 96.3 53 86.8
Sc17g0003730 Simmondsia chinensis HOM05D001987 ORTHO05D006514 1.6e-18 96.3 53 86.8
TAR358G0001 Trochodendron aralioides HOM05D001987 ORTHO05D006514 1.6e-18 96.3 53 86.8
HanXRQChr01g0013341 Helianthus annuus HOM05D001987 ORTHO05D004018 2.1e-18 95.9 53 86.8
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.7e-18 95.5 58 84.5
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.7e-18 95.5 58 84.5
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 2.7e-18 95.5 58 84.5
Hund27846 Selenicereus undatus HOM05D001987 ORTHO05D004018 2.7e-18 95.5 53 84.9
Hund30965 Selenicereus undatus HOM05D001987 ORTHO05D006514 2.7e-18 95.5 53 84.9
Hund31335 Selenicereus undatus HOM05D001987 ORTHO05D004018 2.7e-18 95.5 53 84.9
ATMG00080 Arabidopsis thaliana HOM05D001987 ORTHO05D004018 3.6e-18 95.1 53 84.9
BolSC28t60316H Brassica oleracea HOM05D001987 ORTHO05D004018 3.6e-18 95.1 53 84.9
BraSC48t46331Z Brassica rapa HOM05D001987 ORTHO05D004018 3.6e-18 95.1 53 84.9
BraSC54t46368Z Brassica rapa HOM05D001987 ORTHO05D004018 3.6e-18 95.1 53 84.9
Thhalv10001268m.g Eutrema salsugineum HOM05D001987 ORTHO05D004018 3.6e-18 95.1 53 84.9
Hund12658 Selenicereus undatus HOM05D001987 ORTHO05D006514 3.6e-18 95.1 53 84.9
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 4.7e-18 94.7 60 78.3
Gorai.001G161500 Gossypium raimondii HOM05D001987 ORTHO05D006514 4.7e-18 94.7 53 84.9
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 4.7e-18 94.7 60 78.3
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 6.1e-18 94.4 58 82.8
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 6.1e-18 94.4 52 90.4
Solyc05g045840.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 8.0e-18 94.0 54 83.3
CDE02G0251 Ceratophyllum demersum HOM05D001987 ORTHO05D006514 5.2e-17 91.3 53 83.0
Ciclev10013231m.g Citrus clementina HOM05D001987 ORTHO05D004018 5.2e-17 91.3 53 81.1
SHI20096 Sapria himalayana HOM05D001987 ORTHO05D006514 5.2e-17 91.3 53 83.0
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 8.8e-17 90.5 52 88.5
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 8.8e-17 90.5 52 88.5
Gohir.A13G113500 Gossypium hirsutum HOM05D001987 ORTHO05D006514 1.2e-16 90.1 53 81.1
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 1.5e-16 89.7 58 77.6
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 1.5e-16 89.7 54 85.2
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 2.6e-16 89.0 52 88.5
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 2.6e-16 89.0 54 83.3
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 2.6e-16 89.0 54 83.3
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 2.6e-16 89.0 54 83.3
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 3.3e-16 88.6 54 83.3
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 3.3e-16 88.6 54 83.3
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 3.3e-16 88.6 52 82.7
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 3.3e-16 88.6 54 83.3
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 3.3e-16 88.6 54 83.3
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 3.3e-16 88.6 54 83.3
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 3.3e-16 88.6 54 83.3
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 3.3e-16 88.6 54 83.3
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 4.4e-16 88.2 54 85.2
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 4.4e-16 88.2 52 84.6
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 4.4e-16 88.2 52 84.6
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 5.7e-16 87.8 54 81.5
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 7.5e-16 87.4 52 84.6
Pp3c2_23477 Physcomitrium patens HOM05D001987 ORTHO05D004018 7.5e-16 87.4 52 76.9
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 7.5e-16 87.4 52 82.7
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 7.5e-16 87.4 52 82.7
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.3e-15 86.7 54 83.3
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 1.3e-15 86.7 54 83.3
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 1.3e-15 86.7 54 83.3
Psat7g012480 Pisum sativum HOM05D001987 ORTHO05D006514 1.7e-15 86.3 48 83.3
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 2.8e-15 85.5 54 83.3
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 2.8e-15 85.5 49 81.6
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 3.7e-15 85.1 52 84.6
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 3.7e-15 85.1 52 84.6
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 3.7e-15 85.1 52 84.6
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 3.7e-15 85.1 52 84.6
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 3.7e-15 85.1 52 84.6
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 3.7e-15 85.1 52 84.6
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 3.7e-15 85.1 52 84.6
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 3.7e-15 85.1 52 84.6
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 3.7e-15 85.1 52 84.6
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 3.7e-15 85.1 60 66.7
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 3.7e-15 85.1 54 83.3
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 4.8e-15 84.7 54 79.6
SGA_v2.0_scaffold324G48665 Striga asiatica HOM05D001987 ORTHO05D004018 4.8e-15 84.7 46 87.0
Nitab4.5_0009561g0030 Nicotiana tabacum HOM05D001987 ORTHO05D004018 1.4e-14 83.2 43 90.7
ClCG08G009700 Citrullus lanatus HOM05D001987 ORTHO05D004018 1.8e-14 82.8 47 85.1
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.8e-14 82.8 57 78.9
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 7.0e-14 80.9 46 84.8
SEGI_40200 Sequoiadendron giganteum HOM05D001987 ORTHO05D006514 9.1e-14 80.5 53 73.6
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-13 80.1 58 74.1
Lsat_1_v5_gn_8_132861 Lactuca sativa HOM05D001987 ORTHO05D006514 4.5e-13 78.2 42 88.1
ClCG08G015640 Citrullus lanatus HOM05D001987 ORTHO05D006514 1.0e-12 77.0 47 85.1
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 1.0e-12 77.0 42 88.1
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 5.0e-12 74.7 43 83.7
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 8.5e-12 73.9 54 72.2
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 8.5e-12 73.9 49 81.6
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 1.5e-11 73.2 51 76.5
Peaxi162Scf00084g00915 Petunia axillaris HOM05D001987 ORTHO05D004018 2.5e-11 72.4 54 68.5
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 3.2e-11 72.0 39 87.2
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 9.4e-11 70.5 54 75.9
Mapoly0118s0046 Marchantia polymorpha HOM05D001987 ORTHO05D006514 1.2e-10 70.1 52 65.4
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 4.7e-10 68.2 38 86.8
RcHm_v2.0_MTg0498421 Rosa chinensis HOM05D001987 ORTHO05D004018 6.1e-10 67.8 42 81.0
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 1.8e-09 66.2 45 82.2
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 3.0e-09 65.5 47 74.5
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 2.2e-07 59.3 47 63.8
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 4.8e-07 58.2 50 58.0
Solyc08g074700.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 6.3e-07 57.8 27 92.6
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 1.1e-06 57.0 54 46.3
HanXRQChr05g0147721 Helianthus annuus HOM05D001987 ORTHO05D006514 1.1e-06 57.0 31 83.9
Peaxi162Scf00934g00143 Petunia axillaris HOM05D001987 ORTHO05D006514 2.4e-06 55.8 30 83.3
arahy.Tifrunner.gnm1.ann1.D5EGR1 Arachis hypogaea HOM05D001987 ORTHO05D006514 3.1e-06 55.5 37 67.6
SMO059G0001 Selaginella moellendorffii HOM05D001987 ORTHO05D004018 3.1e-06 55.5 53 45.3
SMO172G0196 Selaginella moellendorffii HOM05D001987 ORTHO05D004018 3.1e-06 55.5 53 45.3
AL4G23360 Arabidopsis lyrata HOM05D001987 ORTHO05D004018 5.4e-06 54.7 50 52.0
EL10Ac4g10036 Beta vulgaris HOM05D001987 ORTHO05D004018 9.1e-06 53.9 51 52.9


User provided reference genes

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