Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g063770.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.7e-138 494.2 242 100.0
RhsimMtG0002600 Rhododendron simsii HOM05D001987 ORTHO05D006514 2.1e-92 342.8 326 59.2
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.8e-90 334.7 452 47.3
Solyc00g500100.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.2e-88 328.6 470 45.7
Solyc00g500274.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.2e-88 328.6 470 45.7
Solyc00g500309.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.3e-85 318.9 462 45.5
Solyc00g500117.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.4e-83 312.8 457 45.3
Dinv06676 Davidia involucrata HOM05D001987 ORTHO05D006514 4.0e-83 312.0 452 45.1
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 3.8e-81 305.4 325 56.3
Cfa023008 Carpinus fangiana HOM05D001987 ORTHO05D006514 6.0e-79 298.1 452 43.8
Ca_30750_v3 Cicer arietinum L. HOM05D001987 ORTHO05D006514 1.1e-77 293.9 344 52.6
TAR358G0001 Trochodendron aralioides HOM05D001987 ORTHO05D006514 7.3e-77 291.2 470 42.3
MBI05_g05348_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 9.6e-77 290.8 460 42.8
Actinidia34925 Actinidia chinensis HOM05D001987 ORTHO05D006514 6.2e-76 288.1 323 53.3
Psat7g012480 Pisum sativum HOM05D001987 ORTHO05D006514 1.8e-75 286.6 452 42.3
SalBow1G3504 Salvia bowleyana HOM05D001987 ORTHO05D006514 4.0e-75 285.4 343 52.8
SalBow1G4210 Salvia bowleyana HOM05D001987 ORTHO05D006514 4.0e-75 285.4 343 52.8
Gorai.001G161500 Gossypium raimondii HOM05D001987 ORTHO05D006514 8.4e-73 277.7 444 42.6
Lalb_Chr00c21g0405751 Lupinus albus HOM05D001987 ORTHO05D006514 2.7e-71 272.7 474 40.5
Lalb_Chr00c24g0407071 Lupinus albus HOM05D001987 ORTHO05D006514 2.7e-71 272.7 474 40.5
arahy.Tifrunner.gnm1.ann1.7A4IEF Arachis hypogaea HOM05D001987 ORTHO05D006514 1.3e-70 270.4 274 56.6
arahy.Tifrunner.gnm1.ann1.8UR9GU Arachis hypogaea HOM05D001987 ORTHO05D006514 1.3e-70 270.4 274 56.6
arahy.Tifrunner.gnm1.ann1.TY26DT Arachis hypogaea HOM05D001987 ORTHO05D006514 1.3e-70 270.4 274 56.6
arahy.Tifrunner.gnm1.ann1.K88Y93 Arachis hypogaea HOM05D001987 ORTHO05D006514 8.7e-70 267.7 274 56.2
HanXRQChr16g0504311 Helianthus annuus HOM05D001987 ORTHO05D006514 1.1e-69 267.3 459 40.7
HanXRQMTg0579601 Helianthus annuus HOM05D001987 ORTHO05D006514 1.1e-69 267.3 459 40.7
Lsat_1_v5_gn_0_38040 Lactuca sativa HOM05D001987 ORTHO05D006514 2.5e-69 266.2 467 40.3
Lalb_Chr11g0070101 Lupinus albus HOM05D001987 ORTHO05D006514 2.5e-69 266.2 474 39.9
CANSAT16G0046 Cannabis sativa HOM05D001987 ORTHO05D006514 2.8e-68 262.7 274 55.5
HanXRQChr05g0147721 Helianthus annuus HOM05D001987 ORTHO05D006514 1.8e-67 260.0 459 40.1
TPR.G26049 Trifolium pratense HOM05D001987 ORTHO05D006514 3.1e-67 259.2 274 54.7
Nn1g10074 Nelumbo nucifera HOM05D001987 ORTHO05D006514 2.7e-63 246.1 253 56.1
DCAR_032448 Daucus carota HOM05D001987 ORTHO05D006514 3.0e-62 242.7 275 52.0
Ah.10g027970 Amaranthus hybridus HOM05D001987 ORTHO05D006514 6.7e-62 241.5 274 51.1
HanXRQChr14g0433081 Helianthus annuus HOM05D001987 ORTHO05D006514 1.1e-61 240.7 273 52.7
A04p09400 Brassica napus HOM05D001987 ORTHO05D006514 6.2e-60 235.0 271 52.0
BolSC28t60371H Brassica oleracea HOM05D001987 ORTHO05D006514 6.2e-60 235.0 271 52.0
BraSC159t45730Z Brassica rapa HOM05D001987 ORTHO05D006514 6.2e-60 235.0 271 52.0
Sp3g25720 Schrenkiella parvula HOM05D001987 ORTHO05D006514 8.2e-60 234.6 271 52.0
Lj2P1221T93 Lonicera japonica HOM05D001987 ORTHO05D006514 1.8e-59 233.4 273 50.5
CARHR282630 Cardamine hirsuta HOM05D001987 ORTHO05D006514 2.4e-59 233.0 271 51.7
Solyc09g015850.4 Solanum lycopersicum HOM05D001987 ORTHO05D006514 6.9e-59 231.5 146 80.1
SHI29633 Sapria himalayana HOM05D001987 ORTHO05D006514 6.5e-57 224.9 435 38.2
CsaV3_UNG208600 Cucumis sativus L. HOM05D001987 ORTHO05D006514 2.5e-56 223.0 521 34.5
ATMG00090 Arabidopsis thaliana HOM05D001987 ORTHO05D006514 4.2e-56 222.2 271 49.8
MBI16_g09478_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 2.3e-54 216.5 286 45.5
CDE02G0251 Ceratophyllum demersum HOM05D001987 ORTHO05D006514 5.1e-54 215.3 485 35.1
BolSC28t60315H Brassica oleracea HOM05D001987 ORTHO05D006514 7.7e-50 201.4 270 46.3
SGA_v2.0_scaffold339G49282 Striga asiatica HOM05D001987 ORTHO05D006514 1.3e-49 200.7 262 50.0
ECA240G1514 Erigeron canadensis HOM05D001987 ORTHO05D006514 8.5e-49 198.0 146 71.2
Ah.02g118900 Amaranthus hybridus HOM05D001987 ORTHO05D006514 3.2e-48 196.1 244 46.3
Hund28418 Selenicereus undatus HOM05D001987 ORTHO05D006514 5.7e-45 185.3 276 43.5
Hund29734 Selenicereus undatus HOM05D001987 ORTHO05D006514 5.7e-45 185.3 276 43.5
Hund29823 Selenicereus undatus HOM05D001987 ORTHO05D006514 5.7e-45 185.3 276 43.5
Hund30343 Selenicereus undatus HOM05D001987 ORTHO05D006514 5.7e-45 185.3 276 43.5
Hund30419 Selenicereus undatus HOM05D001987 ORTHO05D006514 5.7e-45 185.3 276 43.5
MELO3C028575.2 Cucumis melo HOM05D001987 ORTHO05D006514 9.7e-45 184.5 147 66.7
Peaxi162Scf00238g00149 Petunia axillaris HOM05D001987 ORTHO05D006514 6.3e-44 181.8 120 78.3
Hund12658 Selenicereus undatus HOM05D001987 ORTHO05D006514 8.2e-44 181.4 425 34.4
Eucgr.H02719 Eucalyptus grandis HOM05D001987 ORTHO05D006514 3.1e-43 179.5 220 51.8
SHI20096 Sapria himalayana HOM05D001987 ORTHO05D006514 2.6e-42 176.4 364 37.4
Nitab4.5_0010565g0030 Nicotiana tabacum HOM05D000040 ORTHO05D000759 7.2e-40 168.3 122 71.3
CARHR288240 Cardamine hirsuta HOM05D001987 ORTHO05D006514 3.6e-39 166.0 225 48.4
SGA_v2.0_scaffold255G45472 Striga asiatica HOM05D001987 ORTHO05D006514 3.0e-38 162.9 406 33.3
Sopen05g027070 Solanum pennellii HOM05D001987 ORTHO05D006514 5.9e-34 148.7 88 83.0
PSO541G5803 Papaver somniferum HOM05D001987 ORTHO05D006514 4.0e-30 136.0 258 37.2
LjContig00315g0000313 Lotus japonicus HOM05D001987 ORTHO05D006514 8.8e-30 134.8 372 31.7
Sc17g0003730 Simmondsia chinensis HOM05D001987 ORTHO05D006514 7.5e-29 131.7 383 31.1
Peaxi162Scf00934g00143 Petunia axillaris HOM05D001987 ORTHO05D006514 2.8e-28 129.8 243 40.3
PSO675G5335 Papaver somniferum HOM05D001987 ORTHO05D006514 8.2e-28 128.3 243 37.9
Solyc12g035820.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.0e-27 125.2 87 73.6
Nitab4.5_0009561g0020 Nicotiana tabacum HOM05D001987 ORTHO05D006514 3.5e-26 122.9 168 46.4
Nitab4.5_0000309g0220 Nicotiana tabacum HOM05D001987 ORTHO05D006514 4.5e-26 122.5 75 80.0
CAN.G1202.8 Capsicum annuum HOM05D001987 ORTHO05D006514 9.4e-24 114.8 68 82.4
EL10Ac1g01304 Beta vulgaris HOM05D001987 ORTHO05D006514 1.2e-23 114.4 74 79.7
ClCG08G015640 Citrullus lanatus HOM05D001987 ORTHO05D006514 4.7e-23 112.5 205 39.5
Nitab4.5_0000334g0040 Nicotiana tabacum HOM05D001987 ORTHO05D006514 5.2e-22 109.0 109 56.0
unitig_87.g28029 Utricularia gibba HOM05D001987 ORTHO05D006514 9.8e-21 104.8 230 37.4
Peaxi162Scf01098g00013 Petunia axillaris HOM05D001987 ORTHO05D006514 1.7e-20 104.0 227 36.1
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.7e-20 102.8 143 46.9
Nitab4.5_0011784g0040 Nicotiana tabacum HOM05D001987 ORTHO05D006514 4.8e-20 102.4 73 71.2
Nitab4.5_0009703g0120 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.4e-19 100.9 56 83.9
Hma1.2p1_0105F.1_g050680 Hydrangea macrophylla HOM05D001987 ORTHO05D006514 2.0e-18 97.1 57 84.2
Lj2P1230T111 Lonicera japonica HOM05D001987 ORTHO05D006514 7.7e-18 95.1 57 80.7
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 8.5e-17 91.7 48 91.7
ATMG00080 Arabidopsis thaliana HOM05D001987 ORTHO05D004018 5.5e-16 89.0 48 87.5
BolSC28t60316H Brassica oleracea HOM05D001987 ORTHO05D004018 5.5e-16 89.0 48 87.5
BraSC48t46331Z Brassica rapa HOM05D001987 ORTHO05D004018 5.5e-16 89.0 48 87.5
Thhalv10001268m.g Eutrema salsugineum HOM05D001987 ORTHO05D004018 5.5e-16 89.0 48 87.5
Nitab4.5_0000451g0190 Nicotiana tabacum HOM05D001987 ORTHO05D006514 5.5e-16 89.0 49 87.8
Ah.10g028690 Amaranthus hybridus HOM05D001987 ORTHO05D006514 7.2e-16 88.6 57 75.4
Psat1g091000 Pisum sativum HOM05D001987 ORTHO05D006514 7.2e-16 88.6 48 87.5
arahy.Tifrunner.gnm1.ann1.D5EGR1 Arachis hypogaea HOM05D001987 ORTHO05D006514 2.1e-15 87.0 48 85.4
AL5G20250 Arabidopsis lyrata HOM05D001987 ORTHO05D016577 2.7e-15 86.7 48 85.4
DCAR_032447 Daucus carota HOM05D001987 ORTHO05D006514 4.7e-15 85.9 48 85.4
Nitab4.5_0002616g0170 Nicotiana tabacum HOM05D001987 ORTHO05D006514 6.1e-15 85.5 46 91.3
Nitab4.5_0009561g0030 Nicotiana tabacum HOM05D001987 ORTHO05D004018 6.1e-15 85.5 47 87.2
Solyc09g015860.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.0e-14 84.7 48 85.4
PGSC0003DMG400030936 Solanum tuberosum HOM05D001987 ORTHO05D004018 2.3e-14 83.6 48 83.3
HanXRQChr01g0013341 Helianthus annuus HOM05D001987 ORTHO05D004018 4.0e-14 82.8 48 83.3
HanXRQChr01g0013351 Helianthus annuus HOM05D001987 ORTHO05D004018 4.0e-14 82.8 48 83.3
Solyc05g045780.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 8.8e-14 81.6 132 43.9
Lsat_1_v5_gn_8_132861 Lactuca sativa HOM05D001987 ORTHO05D006514 2.6e-13 80.1 73 64.4
SabraMtG0007200 Salix brachista HOM05D001987 ORTHO05D004018 5.7e-13 79.0 60 65.0
Solyc05g045920.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.5e-13 78.6 48 77.1
Sopen05g027050 Solanum pennellii HOM05D001987 ORTHO05D004018 9.8e-13 78.2 48 83.3
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 2.8e-12 76.6 47 78.7
ClCG08G009700 Citrullus lanatus HOM05D001987 ORTHO05D004018 4.9e-12 75.9 42 85.7
Solyc12g035815.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.1e-11 73.2 75 57.3
Nitab4.5_0007876g0050 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.2e-10 71.2 49 73.5
Solyc05g045826.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.2e-10 71.2 41 85.4
Hund27846 Selenicereus undatus HOM05D001987 ORTHO05D004018 1.7e-09 67.4 37 89.2
Lalb_Chr19g0127771 Lupinus albus HOM05D001987 ORTHO05D006514 3.8e-09 66.2 47 74.5
Eucgr.J02744 Eucalyptus grandis HOM05D001987 ORTHO05D006514 5.0e-09 65.9 56 58.9
Hund30965 Selenicereus undatus HOM05D001987 ORTHO05D006514 5.0e-09 65.9 40 85.0
Hund31335 Selenicereus undatus HOM05D001987 ORTHO05D004018 1.1e-08 64.7 35 91.4
SHI01961 Sapria himalayana HOM05D001987 ORTHO05D006514 1.5e-08 64.3 134 35.1
ATR0661G567 Amborella trichopoda HOM05D001987 ORTHO05D006514 3.3e-08 63.2 57 63.2
SEGI_40200 Sequoiadendron giganteum HOM05D001987 ORTHO05D006514 3.3e-08 63.2 42 69.0
Lalb_Chr11g0070921 Lupinus albus HOM05D001987 ORTHO05D006514 6.1e-07 58.9 50 60.0
Pp3c2_23477 Physcomitrium patens HOM05D001987 ORTHO05D004018 1.0e-06 58.2 42 66.7
Gohir.A13G113500 Gossypium hirsutum HOM05D001987 ORTHO05D006514 2.3e-06 57.0 44 63.6


User provided reference genes

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