Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g058210.3 Solanum lycopersicum HOM05D000964 ORTHO05D001488 5.9e-33 143.7 75 100.0
Lsat_1_v5_gn_5_75101 Lactuca sativa HOM05D000416 ORTHO05D000322 1.6e-17 92.4 76 64.5
Solyc00g500031.1 Solanum lycopersicum HOM05D002824 ORTHO05D007162 4.5e-17 90.9 73 65.8
Solyc00g500076.1 Solanum lycopersicum HOM05D002824 ORTHO05D007162 4.5e-17 90.9 73 65.8
COL.COLO4_00733 Corchorus olitorius HOM05D000964 ORTHO05D001488 5.9e-17 90.5 73 67.1
COL.COLO4_01363 Corchorus olitorius HOM05D000964 ORTHO05D001488 5.9e-17 90.5 73 67.1
COL.COLO4_02982 Corchorus olitorius HOM05D000964 ORTHO05D001488 5.9e-17 90.5 73 67.1
COL.COLO4_03119 Corchorus olitorius HOM05D000964 ORTHO05D001488 5.9e-17 90.5 73 67.1
Medtr1779s0020 Medicago truncatula HOM05D000964 ORTHO05D001488 5.9e-17 90.5 73 67.1
HanXRQChr00c0557g0575731 Helianthus annuus HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
HanXRQChr00c0593g0576381 Helianthus annuus HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
HanXRQChr01g0020201 Helianthus annuus HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
HanXRQChr04g0127471 Helianthus annuus HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
HanXRQChr05g0152561 Helianthus annuus HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
HanXRQChr10g0284401 Helianthus annuus HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
HanXRQChr10g0318041 Helianthus annuus HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
HanXRQChr11g0321111 Helianthus annuus HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
HanXRQChr11g0326981 Helianthus annuus HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
HanXRQChr12g0369871 Helianthus annuus HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
HanXRQCPg0580201 Helianthus annuus HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
Lsat_1_v5_gn_2_92060 Lactuca sativa HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
Lsat_1_v5_gn_4_117661 Lactuca sativa HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
Lsat_1_v5_gn_5_61480 Lactuca sativa HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
Lsat_1_v5_gn_6_69081 Lactuca sativa HOM05D000964 ORTHO05D001488 1.0e-16 89.7 73 64.4
CAN.G1595.1 Capsicum annuum HOM05D000964 ORTHO05D001488 1.3e-16 89.4 73 63.0
Migut.D01330 Erythranthe guttata HOM05D000964 ORTHO05D001488 1.3e-16 89.4 73 64.4
Lalb_Chr03g0039331 Lupinus albus HOM05D000964 ORTHO05D001488 1.3e-16 89.4 73 65.8
Lalb_Chr25g0283381 Lupinus albus HOM05D000964 ORTHO05D001488 1.3e-16 89.4 73 65.8
AL2G20550 Arabidopsis lyrata HOM05D000964 ORTHO05D001488 1.7e-16 89.0 75 65.3
ATCG00780 Arabidopsis thaliana HOM05D000964 ORTHO05D001488 1.7e-16 89.0 75 65.3
PGR111G0011 Punica granatum HOM05D000964 ORTHO05D001488 1.7e-16 89.0 73 63.0
TAR375G0517 Trochodendron aralioides HOM05D000964 ORTHO05D001488 1.7e-16 89.0 73 63.0
Lsat_1_v5_gn_7_23101 Lactuca sativa HOM05D000964 ORTHO05D001488 2.2e-16 88.6 73 63.0
Lsat_1_v5_gn_8_146160 Lactuca sativa HOM05D000964 ORTHO05D001488 2.2e-16 88.6 73 64.4
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 2.2e-16 88.6 73 65.8
CDE02G2328 Ceratophyllum demersum HOM05D000299 ORTHO05D000079 2.9e-16 88.2 73 63.0
Oeu062850.1 Olea europaea HOM05D000964 ORTHO05D001488 2.9e-16 88.2 70 62.9
AL1G67320 Arabidopsis lyrata HOM05D000964 ORTHO05D001488 3.8e-16 87.8 75 64.0
EL10Ac5g11670 Beta vulgaris HOM05D000964 ORTHO05D001488 3.8e-16 87.8 73 65.8
EL10As12g24035 Beta vulgaris HOM05D000964 ORTHO05D001488 3.8e-16 87.8 73 65.8
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 3.8e-16 87.8 73 64.4
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 3.8e-16 87.8 73 64.4
Solyc00g500155.1 Solanum lycopersicum HOM05D000964 ORTHO05D001488 3.8e-16 87.8 73 64.4
Solyc09g050064.1 Solanum lycopersicum HOM05D000964 ORTHO05D001488 3.8e-16 87.8 73 64.4
AL2G21730 Arabidopsis lyrata HOM05D000964 ORTHO05D001488 5.0e-16 87.4 75 64.0
Gohir.1Z050034 Gossypium hirsutum HOM05D000964 ORTHO05D001488 5.0e-16 87.4 62 71.0
Gohir.A12G024700 Gossypium hirsutum HOM05D000964 ORTHO05D001488 5.0e-16 87.4 62 71.0
RcHm_v2.0_Chr2g0118581 Rosa chinensis HOM05D000964 ORTHO05D001488 5.0e-16 87.4 58 72.4
FvH4_c3g00180 Fragaria vesca HOM05D000964 ORTHO05D001488 6.5e-16 87.0 73 64.4
PGSC0003DMG400014076 Solanum tuberosum HOM05D000964 ORTHO05D001488 6.5e-16 87.0 73 64.4
HanXRQChr11g0345291 Helianthus annuus HOM05D000964 ORTHO05D001488 8.5e-16 86.7 73 61.6
BraSC58t46503Z Brassica rapa HOM05D000964 ORTHO05D001488 1.1e-15 86.3 75 64.0
SGA_v2.0_scaffold3325G54315 Striga asiatica HOM05D001987 ORTHO05D004018 1.1e-15 86.3 73 63.0
unitig_91.g26512 Utricularia gibba HOM05D000964 ORTHO05D001488 1.1e-15 86.3 62 66.1
ATR0306G001 Amborella trichopoda HOM05D000964 ORTHO05D001488 1.5e-15 85.9 73 64.4
CARHR282260 Cardamine hirsuta HOM05D000964 ORTHO05D001488 1.5e-15 85.9 75 64.0
Eucgr.J02666 Eucalyptus grandis HOM05D000964 ORTHO05D001488 1.9e-15 85.5 73 60.3
HanXRQChr17g0554551 Helianthus annuus HOM05D000964 ORTHO05D001488 1.9e-15 85.5 73 61.6
CAN.G127.13 Capsicum annuum HOM05D000964 ORTHO05D001488 2.5e-15 85.1 73 61.6
Gohir.A05G326940 Gossypium hirsutum HOM05D000964 ORTHO05D001488 2.5e-15 85.1 62 67.7
Nitab4.5_0004430g0060 Nicotiana tabacum HOM05D000964 ORTHO05D001488 2.5e-15 85.1 73 63.0
PSO548G0092 Papaver somniferum HOM05D000964 ORTHO05D001488 2.5e-15 85.1 73 63.0
Sopen04g015500 Solanum pennellii HOM05D000964 ORTHO05D001488 3.2e-15 84.7 73 61.6
MELO3C000241.2 Cucumis melo HOM05D000964 ORTHO05D001488 4.2e-15 84.3 73 63.0
MELO3C011920.2 Cucumis melo HOM05D000964 ORTHO05D001488 4.2e-15 84.3 73 60.3
DCAR_032522 Daucus carota HOM05D000964 ORTHO05D001488 4.2e-15 84.3 73 63.0
Lj2C1237T34 Lonicera japonica HOM05D000964 ORTHO05D001488 4.2e-15 84.3 73 61.6
Lj2C1239T1 Lonicera japonica HOM05D000964 ORTHO05D003870 4.2e-15 84.3 73 61.6
Sed0005999 Sechium edule HOM05D001987 ORTHO05D004018 4.2e-15 84.3 75 61.3
C03p38110 Brassica napus HOM05D000964 ORTHO05D001488 5.5e-15 84.0 75 62.7
BolSC29t60530H Brassica oleracea HOM05D000964 ORTHO05D001488 5.5e-15 84.0 75 62.7
BolSC29t60611H Brassica oleracea HOM05D000964 ORTHO05D001488 5.5e-15 84.0 75 62.7
BolSC35t60671H Brassica oleracea HOM05D000964 ORTHO05D001488 5.5e-15 84.0 75 62.7
BolSC35t60728H Brassica oleracea HOM05D000964 ORTHO05D001488 5.5e-15 84.0 75 62.7
BolSC49t61162H Brassica oleracea HOM05D000964 ORTHO05D001488 5.5e-15 84.0 75 62.7
Sed0006108 Sechium edule HOM05D000964 ORTHO05D001488 5.5e-15 84.0 73 61.6
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.4e-15 83.2 73 64.4
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.4e-15 83.2 73 64.4
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.4e-15 83.2 73 64.4
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.4e-15 83.2 73 64.4
arahy.Tifrunner.gnm1.ann1.3G0LJS Arachis hypogaea HOM05D000964 ORTHO05D001488 9.4e-15 83.2 73 61.6
CAN.G327.21 Capsicum annuum HOM05D000964 ORTHO05D001488 9.4e-15 83.2 73 61.6
Nn5g27521 Nelumbo nucifera HOM05D000964 ORTHO05D001488 1.6e-14 82.4 73 58.9
Medtr2g087550 Medicago truncatula HOM05D000964 ORTHO05D001488 2.1e-14 82.0 73 61.6
Medtr4g051390 Medicago truncatula HOM05D000964 ORTHO05D001488 2.1e-14 82.0 73 61.6
Gohir.A07G083227 Gossypium hirsutum HOM05D000964 ORTHO05D001488 2.7e-14 81.6 57 73.7
Gohir.D05G296950 Gossypium hirsutum HOM05D000964 ORTHO05D001488 2.7e-14 81.6 62 62.9
Gorai.009G314100 Gossypium raimondii HOM05D000964 ORTHO05D001488 2.7e-14 81.6 62 62.9
Sc09g0009720 Simmondsia chinensis HOM05D007792 ORTHO05D001488 4.7e-14 80.9 69 63.8
ClCG11G017160 Citrullus lanatus HOM05D000964 ORTHO05D001488 6.1e-14 80.5 73 60.3
Cpa.g.sc0.195 Carica papaya HOM05D000964 ORTHO05D001488 8.0e-14 80.1 68 63.2
arahy.Tifrunner.gnm1.ann1.BFV6G3 Arachis hypogaea HOM05D000964 ORTHO05D001488 1.0e-13 79.7 72 58.3
Gohir.D08G014633 Gossypium hirsutum HOM05D000964 ORTHO05D001488 1.0e-13 79.7 58 67.2
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.0e-13 79.7 71 60.6
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.0e-13 79.7 71 60.6
HanXRQChr16g0530221 Helianthus annuus HOM05D000964 ORTHO05D001488 1.4e-13 79.3 73 60.3
Lsat_1_v5_gn_5_50441 Lactuca sativa HOM05D000964 ORTHO05D001488 1.4e-13 79.3 68 61.8
Oeu028769.1 Olea europaea HOM05D000964 ORTHO05D001488 2.3e-13 78.6 62 64.5
BraSC103t45485Z Brassica rapa HOM05D000964 ORTHO05D001488 3.0e-13 78.2 76 60.5
Eucgr.A01257 Eucalyptus grandis HOM05D000964 ORTHO05D001488 4.0e-13 77.8 73 56.2
Lalb_Chr13g0291601 Lupinus albus HOM05D000964 ORTHO05D001488 5.2e-13 77.4 62 59.7
Psat3g134240 Pisum sativum HOM05D000964 ORTHO05D001488 8.8e-13 76.6 73 56.2
Nn1g01957 Nelumbo nucifera HOM05D000964 ORTHO05D001488 1.2e-12 76.3 54 63.0
Psat1g099160 Pisum sativum HOM05D000964 ORTHO05D001488 1.5e-12 75.9 73 54.8
MELO3C004854.2 Cucumis melo HOM05D000964 ORTHO05D001488 2.6e-12 75.1 53 67.9
Lsat_1_v5_gn_0_41580 Lactuca sativa HOM05D000964 ORTHO05D001488 2.6e-12 75.1 68 58.8
Psat5g284200 Pisum sativum HOM05D000964 ORTHO05D001488 2.6e-12 75.1 73 54.8
HPP92_028394 Vanilla planifolia HOM05D000964 ORTHO05D001488 9.7e-12 73.2 58 60.3
HPP92_028426 Vanilla planifolia HOM05D000964 ORTHO05D001488 9.7e-12 73.2 58 60.3
Hma1.2p1_0298F.1_g117750 Hydrangea macrophylla HOM05D000964 ORTHO05D001488 2.8e-11 71.6 62 61.3
Hma1.2p1_0818F.1_g223309 Hydrangea macrophylla HOM05D000964 ORTHO05D001488 2.8e-11 71.6 62 61.3
Gorai.007G246200 Gossypium raimondii HOM05D000964 ORTHO05D001488 3.7e-11 71.2 61 55.7
ECA074G0005 Erigeron canadensis HOM05D000540 ORTHO05D000681 4.8e-11 70.9 62 61.3
SMO086G0003 Selaginella moellendorffii HOM05D000964 ORTHO05D001488 6.3e-11 70.5 73 53.4
Sed0010415 Sechium edule HOM05D000964 ORTHO05D003870 1.4e-10 69.3 62 59.7
EL10As9g23923 Beta vulgaris HOM05D000964 ORTHO05D001488 1.8e-10 68.9 62 62.9
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 4.1e-10 67.8 62 61.3
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 4.1e-10 67.8 62 61.3
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 4.1e-10 67.8 62 61.3
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 4.1e-10 67.8 62 61.3
Lsat_1_v5_gn_5_144720 Lactuca sativa HOM05D000964 ORTHO05D001488 4.1e-10 67.8 71 52.1
Hund08801 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund27579 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund27963 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund27986 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund28110 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund28269 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund28460 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund28520 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund28530 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund28633 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund28679 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund28747 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund28760 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund28777 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund28847 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund29023 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund29037 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund29165 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund29218 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund29504 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund29526 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund29538 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund29555 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund29594 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund29606 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund29613 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund29683 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund29958 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund30212 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund30273 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund30491 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund30494 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund30543 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund30582 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund30723 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund30735 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
Hund31364 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.0e-10 67.0 73 53.4
arahy.Tifrunner.gnm1.ann1.D8GGRD Arachis hypogaea HOM05D000216 ORTHO05D001488 9.1e-10 66.6 69 55.1
VMungo0576G0001 Vigna mungo HOM05D000964 ORTHO05D001488 1.2e-09 66.2 66 54.5
arahy.Tifrunner.gnm1.ann1.1EZ6RQ Arachis hypogaea HOM05D000964 ORTHO05D001488 3.5e-09 64.7 67 56.7
arahy.Tifrunner.gnm1.ann1.MWRF4M Arachis hypogaea HOM05D001987 ORTHO05D004018 3.5e-09 64.7 62 56.5
SEGI_33647 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.5e-09 64.3 62 51.6
Lsat_1_v5_gn_7_76960 Lactuca sativa HOM05D000964 ORTHO05D001488 3.8e-08 61.2 56 58.9
Ciclev10023476m.g Citrus clementina HOM05D000964 ORTHO05D001488 8.5e-08 60.1 73 47.9
Nn002s41362 Nelumbo nucifera HOM05D000964 ORTHO05D001488 1.9e-07 58.9 54 59.3
QL93p1376_0002 Quercus lobata HOM05D000964 ORTHO05D001488 2.5e-07 58.5 54 61.1
arahy.Tifrunner.gnm1.ann1.82YIJR Arachis hypogaea HOM05D001987 ORTHO05D004018 3.2e-07 58.2 51 56.9
Cpa.g.sc76.30 Carica papaya HOM05D000964 ORTHO05D001488 3.2e-07 58.2 54 59.3
Atru.chr4.443 Acer truncatum HOM05D000964 ORTHO05D001488 4.2e-07 57.8 54 59.3
RcHm_v2.0_CPg0501861 Rosa chinensis HOM05D000964 ORTHO05D001488 4.2e-07 57.8 54 59.3
Gohir.D09G044650 Gossypium hirsutum HOM05D000964 ORTHO05D001488 7.2e-07 57.0 56 51.8
Gorai.006G065900 Gossypium raimondii HOM05D000964 ORTHO05D001488 1.2e-06 56.2 53 52.8
Nitab4.5_0000173g0100 Nicotiana tabacum HOM05D000964 ORTHO05D001488 1.2e-06 56.2 54 55.6
HanXRQChr15g0490891 Helianthus annuus HOM05D000964 ORTHO05D001488 1.6e-06 55.8 54 55.6
BolSC29t60629H Brassica oleracea HOM05D000964 ORTHO05D001488 2.1e-06 55.5 56 58.9
Medtr0002s0780 Medicago truncatula HOM05D001987 ORTHO05D004018 3.6e-06 54.7 52 55.8
SalBow1G3145 Salvia bowleyana HOM05D000964 ORTHO05D003870 4.7e-06 54.3 49 59.2
arahy.Tifrunner.gnm1.ann1.BL252W Arachis hypogaea HOM05D000964 ORTHO05D001488 8.0e-06 53.5 54 57.4
CsaV3_5G013200 Cucumis sativus L. HOM05D000580 ORTHO05D001488 8.0e-06 53.5 36 69.4


User provided reference genes

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