Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.3e-88 329.7 169 100.0
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 1.1e-76 290.0 212 74.5
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 5.7e-76 287.7 212 74.1
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 7.4e-76 287.3 212 74.1
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 8.2e-67 257.3 212 67.5
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 8.2e-67 257.3 212 67.5
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.4e-66 256.5 212 67.5
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 1.8e-66 256.1 212 67.0
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 4.1e-66 255.0 212 67.0
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 5.3e-66 254.6 212 67.0
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.6e-62 241.9 212 62.7
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 3.6e-62 241.9 212 62.7
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 8.0e-62 240.7 212 62.3
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 8.0e-62 240.7 212 62.3
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 1.4e-61 240.0 168 77.4
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 2.3e-61 239.2 212 61.8
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 2.3e-61 239.2 212 61.8
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 8.8e-61 237.3 212 62.3
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 1.1e-60 236.9 211 62.6
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 2.6e-60 235.7 212 62.3
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 3.3e-60 235.3 200 66.0
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 4.4e-60 235.0 212 61.3
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 9.7e-60 233.8 211 61.6
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 2.8e-59 232.3 212 61.3
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 4.8e-59 231.5 212 61.3
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 4.8e-59 231.5 212 59.9
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 6.3e-59 231.1 212 59.9
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 1.1e-58 230.3 211 59.7
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 1.8e-58 229.6 212 59.9
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 2.4e-58 229.2 212 59.4
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 2.4e-58 229.2 212 59.9
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 3.1e-58 228.8 212 59.4
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 3.1e-58 228.8 212 61.3
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 4.1e-58 228.4 212 59.9
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 1.2e-57 226.9 212 58.5
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 1.6e-57 226.5 212 59.4
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 2.6e-57 225.7 212 57.5
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 2.6e-57 225.7 212 57.5
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 2.6e-57 225.7 184 67.9
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 3.5e-57 225.3 212 58.5
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.5e-57 225.3 212 59.0
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 3.5e-57 225.3 212 59.0
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 4.5e-57 224.9 212 57.1
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 5.9e-57 224.6 212 59.0
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 5.9e-57 224.6 212 57.1
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 5.9e-57 224.6 212 57.1
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 7.7e-57 224.2 212 58.5
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 7.7e-57 224.2 218 55.5
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.3e-56 223.4 212 58.5
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.3e-56 223.4 212 58.5
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 1.3e-56 223.4 212 59.4
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 2.2e-56 222.6 213 59.6
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 2.9e-56 222.2 211 58.8
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 2.9e-56 222.2 212 58.5
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 3.8e-56 221.9 212 57.5
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 5.0e-56 221.5 212 58.5
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 5.0e-56 221.5 212 57.5
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 6.5e-56 221.1 211 57.3
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 6.5e-56 221.1 212 57.5
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 8.5e-56 220.7 212 58.0
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.1e-55 220.3 212 58.5
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 1.1e-55 220.3 212 56.6
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 1.1e-55 220.3 212 57.1
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 2.5e-55 219.2 212 59.0
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 2.5e-55 219.2 212 56.1
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 3.2e-55 218.8 212 59.0
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 4.2e-55 218.4 212 56.6
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 4.2e-55 218.4 212 56.6
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 4.2e-55 218.4 212 56.6
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 4.2e-55 218.4 212 56.6
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 1.2e-54 216.9 212 57.5
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.2e-54 216.9 212 57.5
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 1.2e-54 216.9 212 57.1
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 2.7e-54 215.7 201 60.7
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 3.6e-54 215.3 212 56.1
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.6e-54 215.3 211 57.3
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 3.6e-54 215.3 212 54.7
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 6.1e-54 214.5 212 54.2
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 6.1e-54 214.5 212 56.1
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 8.0e-54 214.2 212 54.7
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 8.0e-54 214.2 211 56.4
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 1.0e-53 213.8 214 57.9
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 1.0e-53 213.8 201 58.2
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 1.4e-53 213.4 212 56.1
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 2.3e-53 212.6 212 56.1
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 2.3e-53 212.6 212 58.0
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 6.7e-53 211.1 212 53.8
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.2e-52 210.3 201 60.7
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 3.3e-52 208.8 168 70.8
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 4.4e-52 208.4 201 57.7
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 9.7e-52 207.2 203 57.1
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 1.3e-51 206.8 201 57.7
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.7e-51 206.5 203 56.2
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.7e-51 206.5 202 56.9
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 1.7e-51 206.5 205 57.6
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 4.8e-51 204.9 212 52.4
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 4.8e-51 204.9 288 46.2
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 8.3e-51 204.1 213 53.5
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 8.3e-51 204.1 213 53.5
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 8.3e-51 204.1 213 53.5
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 1.1e-50 203.8 213 53.5
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 1.1e-50 203.8 213 53.5
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 1.4e-50 203.4 213 53.5
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 2.4e-50 202.6 195 58.5
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 1.2e-49 200.3 183 60.7
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 1.0e-48 197.2 205 55.1
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 1.0e-48 197.2 202 53.5
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.7e-48 196.4 203 52.7
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 6.8e-45 184.5 216 44.4
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 8.8e-45 184.1 210 48.6
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 2.0e-44 183.0 271 41.7
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 2.0e-44 183.0 212 47.6
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 8.3e-43 177.6 201 51.2
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 8.6e-40 167.5 210 44.3
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 5.5e-39 164.9 210 44.8
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.2e-38 163.7 168 53.6
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 1.2e-38 163.7 185 53.0
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.2e-36 157.1 173 50.9
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 8.3e-35 151.0 171 53.8
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 5.4e-34 148.3 164 49.4
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.4e-29 133.7 212 42.5
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 3.2e-26 122.5 77 81.8
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 4.1e-26 122.1 77 81.8
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 6.0e-25 118.2 139 47.5
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 3.9e-24 115.5 77 77.9
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 1.9e-23 113.2 77 76.6
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 9.5e-23 110.9 84 61.9
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 6.8e-21 104.8 170 41.2
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 2.0e-20 103.2 145 49.7
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 1.4e-18 97.1 75 68.0
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 2.1e-17 93.2 161 34.8
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 4.0e-13 79.0 119 43.7
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.5e-12 77.0 47 83.0
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 8.3e-11 71.2 53 62.3
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 1.1e-10 70.9 45 75.6
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 1.2e-09 67.4 60 61.7
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 8.6e-08 61.2 156 35.9
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 6.2e-06 55.1 34 79.4


User provided reference genes

Program Settings