Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 4081.2 2197 100.0
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 4044.6 2197 98.7
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 3317.7 2176 83.8
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 3271.9 2178 82.5
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 3240.3 2232 80.5
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 2476.0 2217 62.7
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2397.5 2229 61.8
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2275.0 2233 58.7
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2253.8 2238 58.8
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 2215.7 2221 58.6
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 2188.3 2231 56.6
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 2172.9 2220 56.8
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2145.5 2228 56.8
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2105.5 2225 56.1
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2103.9 2225 55.7
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2100.5 2225 55.3
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2080.8 2230 54.8
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2071.2 2235 54.7
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2070.0 2223 55.1
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2068.9 2227 55.5
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2057.0 2234 55.3
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2054.6 2235 54.1
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2036.9 2231 53.6
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2034.2 2225 53.5
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2031.9 2271 54.1
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 2031.5 2299 53.8
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2016.1 2312 52.9
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2015.4 2230 54.2
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2007.6 1723 63.7
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2003.4 2254 52.8
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 1992.6 2232 54.1
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1992.2 2220 54.1
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1991.9 2286 52.1
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1984.1 2280 52.0
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 1973.7 2231 53.2
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1973.7 2235 52.5
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1969.1 2297 51.3
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1968.4 2235 53.3
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 1953.7 2233 53.0
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1953.7 2235 53.2
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1937.9 2234 52.6
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 1936.4 2266 52.3
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1934.5 2233 51.7
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 1924.1 2243 51.9
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1916.0 2239 52.2
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1914.0 2242 51.7
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 1895.9 2238 51.4
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 1893.2 2229 51.9
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 1874.0 2241 51.4
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 1857.8 2310 50.3
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 1857.8 2242 51.8
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 1855.9 2241 50.6
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 1849.3 2244 51.6
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1847.0 2268 50.6
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 1845.1 2236 51.2
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 1842.8 2280 50.9
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 1835.5 2213 50.7
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1835.1 2268 49.8
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 1834.3 2237 50.7
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1825.4 2162 52.3
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1804.3 2193 50.5
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1800.8 2208 49.2
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1800.4 2195 50.8
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1787.7 2039 52.5
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1782.7 2185 51.0
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1778.5 2042 52.0
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1775.4 1920 52.6
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 1733.0 2143 49.7
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1726.1 2238 48.9
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1697.6 2223 47.7
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1696.8 2200 48.7
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1692.2 2228 47.9
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1686.4 2123 49.6
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1683.7 2232 47.6
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1675.6 1393 63.0
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1672.9 2242 47.5
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1669.8 1393 62.8
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1666.7 2239 47.3
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1664.8 2227 47.0
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1660.2 2231 47.4
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1648.6 2217 47.2
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1624.4 2221 46.7
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1620.5 2219 46.5
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1609.3 2232 46.7
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1591.6 2240 45.8
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1590.1 2239 46.3
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1535.8 2365 44.4
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1515.0 1252 64.1
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1505.0 1393 57.4
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1430.6 1427 55.4
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1404.4 2227 43.6
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1362.1 2248 41.0
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 0.0e+00 1353.2 924 85.6
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1343.2 2273 41.5
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1179.9 1472 50.5
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 1.5e-309 1067.4 1633 43.6
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 1.6e-308 1063.9 1387 51.3
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 7.4e-293 1011.9 818 65.6
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 1.4e-283 981.1 1367 47.3
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 3.4e-261 906.7 1240 48.5
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 2.8e-260 903.7 1315 44.6
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 8.8e-254 882.1 1265 47.0
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 2.3e-233 814.3 1121 43.5
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 3.4e-197 694.1 1710 31.2
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.6e-178 632.1 834 56.6
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 2.3e-177 628.2 834 56.2
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.6e-168 598.2 973 42.4
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 7.2e-163 580.1 486 60.9
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 1.3e-156 559.3 860 50.3
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 1.5e-147 529.3 277 97.5
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 2.7e-141 508.4 1666 28.6
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.0e-132 479.9 1048 35.9
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 2.2e-127 462.2 1063 38.1
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 7.8e-125 453.8 426 54.0
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 2.4e-118 432.2 1373 28.6
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 3.6e-114 418.3 661 43.0
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 4.6e-109 401.4 343 60.6
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 2.4e-97 362.5 906 34.3
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 2.8e-74 285.8 457 47.3
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 6.2e-74 284.6 215 64.2
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 4.0e-73 282.0 295 53.6
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 4.9e-71 275.0 1369 24.1
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 6.0e-69 268.1 387 41.1
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 1.1e-65 257.3 462 48.5
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 5.0e-63 248.4 163 74.2
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.0e-55 221.9 153 70.6
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 3.3e-51 209.1 459 43.1
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.5e-48 200.3 326 41.1
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 2.2e-47 196.4 198 68.7
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 5.2e-44 185.3 697 34.3
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 5.2e-44 185.3 137 64.2
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 9.1e-41 174.5 329 37.1
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 4.5e-40 172.2 237 47.7
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.5e-35 157.1 112 68.8
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 3.1e-33 149.4 209 43.5
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 1.2e-32 147.5 176 51.1
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.8e-31 142.5 543 28.0
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 2.6e-27 129.8 327 33.3
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 2.8e-26 126.3 127 55.1
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.8e-26 125.6 326 30.7
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.9e-23 116.3 223 35.0
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 1.5e-22 114.0 101 60.4
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.0e-20 105.9 106 63.2
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 7.0e-17 95.1 68 64.7
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 5.6e-14 85.5 133 33.8
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.2e-13 84.3 74 67.6
Nitab4.5_0003731g0040 Nicotiana tabacum HOM05D011943 ORTHO05D015721 1.6e-13 84.0 79 55.7
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 6.8e-12 78.6 219 37.4
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 1.5e-11 77.4 69 58.0
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.7e-10 72.8 412 28.9
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 4.9e-10 72.4 74 55.4
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 4.1e-09 69.3 45 77.8
Actinidia03884 Actinidia chinensis HOM05D004426 ORTHO05D005417 7.8e-08 65.1 135 37.0
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 8.6e-07 61.6 65 52.3
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.3e-06 59.7 79 48.1
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 3.3e-06 59.7 195 27.2
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 3.3e-06 59.7 50 58.0


User provided reference genes

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