Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 2.0e-147 525.8 269 100.0
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 2.8e-146 521.9 269 99.3
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 1.8e-145 519.2 269 99.6
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 1.2e-136 490.0 295 86.8
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 1.3e-114 416.8 269 77.3
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 3.8e-114 415.2 269 79.2
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 4.9e-114 414.8 230 92.6
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 4.6e-112 408.3 269 76.6
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 4.6e-112 408.3 270 75.6
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.7e-111 406.4 270 76.3
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 2.5e-110 402.5 268 75.7
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.4e-108 396.7 270 75.6
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.8e-108 396.4 282 73.8
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.8e-108 396.4 270 75.9
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 2.4e-108 396.0 270 75.2
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 3.1e-108 395.6 269 75.5
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 8.9e-108 394.0 269 75.1
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.3e-106 390.2 269 79.6
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 2.2e-106 389.4 272 73.9
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 3.8e-106 388.7 267 73.4
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 6.4e-106 387.9 269 74.0
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 1.1e-105 387.1 270 74.8
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.4e-105 386.7 270 73.3
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.9e-105 386.3 270 73.3
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 3.2e-105 385.6 272 74.3
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 1.2e-104 383.6 270 72.2
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.2e-104 383.6 272 73.5
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.7e-104 382.5 270 73.3
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 1.0e-103 380.6 270 73.0
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 1.0e-103 380.6 269 72.9
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.3e-103 380.2 270 74.1
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 2.3e-103 379.4 271 73.1
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 3.9e-103 378.6 271 73.4
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 3.9e-103 378.6 269 72.5
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 6.6e-103 377.9 268 72.0
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 6.6e-103 377.9 272 72.4
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 8.7e-103 377.5 269 72.1
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 8.7e-103 377.5 269 71.4
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.5e-102 376.7 285 70.9
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 1.9e-102 376.3 269 71.7
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 2.5e-102 375.9 271 73.4
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 2.5e-102 375.9 272 71.3
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 4.3e-102 375.2 270 72.6
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 5.6e-102 374.8 271 72.0
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 5.6e-102 374.8 273 72.5
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 5.6e-102 374.8 256 77.7
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 5.6e-102 374.8 271 70.5
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 5.6e-102 374.8 269 71.0
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 5.6e-102 374.8 258 74.8
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 7.3e-102 374.4 270 71.9
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 1.3e-101 373.6 269 70.6
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 1.3e-101 373.6 271 72.0
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 1.3e-101 373.6 270 71.9
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 1.3e-101 373.6 270 72.2
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.3e-101 373.6 272 71.0
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 1.6e-101 373.2 270 71.9
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 1.6e-101 373.2 271 73.4
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 2.1e-101 372.9 269 72.5
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 2.1e-101 372.9 271 70.8
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 6.2e-101 371.3 267 72.3
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 6.2e-101 371.3 272 70.6
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 8.1e-101 370.9 271 72.0
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 8.1e-101 370.9 271 70.1
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 8.1e-101 370.9 282 69.5
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 1.1e-100 370.5 270 71.5
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.4e-100 370.2 272 70.6
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 1.4e-100 370.2 254 74.4
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 1.8e-100 369.8 270 70.4
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 2.4e-100 369.4 271 70.5
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.1e-100 369.0 270 71.1
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.1e-100 369.0 270 71.1
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.0e-100 368.6 272 70.2
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.0e-100 368.6 272 70.2
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.3e-100 368.2 280 68.6
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 5.3e-100 368.2 271 72.0
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 1.2e-99 367.1 270 69.3
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 3.4e-99 365.5 270 70.7
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 4.5e-99 365.2 273 71.1
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 5.8e-99 364.8 273 68.5
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 2.9e-98 362.5 270 70.4
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.8e-98 362.1 276 71.0
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 1.9e-97 359.8 297 65.0
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 3.2e-97 359.0 271 69.7
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 2.1e-96 356.3 284 66.9
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 2.1e-96 356.3 292 63.4
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 2.1e-96 356.3 272 68.8
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 2.1e-96 356.3 272 68.8
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 4.6e-96 355.1 270 68.9
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 6.0e-96 354.8 264 70.5
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 7.9e-96 354.4 270 68.1
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.3e-95 353.6 270 68.1
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.3e-95 353.6 270 68.1
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 1.3e-95 353.6 269 68.8
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 6.7e-95 351.3 271 68.3
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 1.5e-94 350.1 272 68.4
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 1.5e-94 350.1 270 68.1
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.5e-94 350.1 270 67.8
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.9e-94 349.7 270 68.1
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.5e-94 349.4 270 68.5
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 4.8e-93 345.1 305 60.3
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 4.8e-93 345.1 305 60.3
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 1.1e-92 344.0 273 67.8
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 2.4e-92 342.8 329 57.4
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.2e-91 340.5 273 66.3
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.5e-91 340.1 342 55.6
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 3.4e-91 339.0 272 69.5
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 5.8e-91 338.2 272 69.5
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 9.9e-91 337.4 272 64.7
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 1.7e-90 336.7 233 73.4
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 1.4e-89 333.6 236 73.3
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 1.9e-89 333.2 269 64.7
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.9e-89 333.2 272 65.8
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 9.3e-89 330.9 272 63.6
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 3.5e-88 328.9 272 68.4
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 3.0e-87 325.9 271 63.8
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 4.3e-86 322.0 272 65.8
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 4.3e-86 322.0 331 56.5
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 7.4e-86 321.2 272 65.8
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 1.6e-85 320.1 317 56.8
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 2.8e-85 319.3 232 71.6
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 4.8e-85 318.5 230 70.9
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 1.4e-84 317.0 266 64.3
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 2.4e-84 316.2 260 66.2
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 2.6e-83 312.8 234 69.7
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 3.4e-83 312.4 275 63.3
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.8e-83 311.6 231 69.7
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 2.2e-82 309.7 275 61.5
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 8.7e-79 297.7 278 61.2
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 9.6e-78 294.3 229 67.2
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.1e-77 293.1 162 95.7
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 3.4e-75 285.8 360 49.4
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 7.6e-75 284.6 263 60.1
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 7.6e-75 284.6 231 67.5
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 2.5e-73 279.6 266 58.3
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 4.2e-73 278.9 337 48.7
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 7.9e-72 274.6 233 65.2
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 8.7e-71 271.2 276 55.1
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.1e-70 270.8 283 54.8
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.7e-69 265.8 175 77.1
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 1.4e-68 263.8 231 62.8
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 2.5e-65 253.1 201 66.2
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 3.0e-63 246.1 260 51.2
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 3.9e-63 245.7 262 54.6
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 8.8e-63 244.6 270 52.6
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 3.3e-62 242.7 260 51.9
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 2.2e-61 240.0 181 69.6
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 2.8e-61 239.6 258 53.9
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.3e-58 230.7 266 50.8
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 7.9e-56 221.5 172 66.3
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 1.4e-55 220.7 173 64.7
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 1.6e-51 207.2 160 65.6
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 1.0e-50 204.5 130 75.4
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 1.5e-49 200.7 169 63.9
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.2e-49 199.5 254 50.0
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 5.5e-49 198.7 148 66.2
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.6e-48 196.1 175 60.0
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 8.0e-48 194.9 153 64.7
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 4.0e-47 192.6 201 55.2
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 2.2e-45 186.8 213 52.6
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 5.0e-42 175.6 142 66.9
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 6.5e-42 175.3 234 46.2
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 9.4e-41 171.4 133 69.9
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.2e-37 160.2 232 44.0
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.4e-36 155.6 182 50.0
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.0e-35 153.7 125 63.2
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 6.5e-34 148.7 139 55.4
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.5e-33 145.6 162 52.5
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 2.8e-29 133.3 178 44.4
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 2.3e-26 123.6 91 71.4
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 6.6e-26 122.1 87 72.4
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 9.8e-22 108.2 64 79.7
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 4.9e-21 105.9 153 47.7
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 3.2e-20 103.2 74 68.9
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 5.4e-20 102.4 150 43.3
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 7.8e-19 98.6 67 71.6
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 8.0e-16 88.6 74 63.5
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.1e-07 61.6 42 73.8
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 1.5e-06 57.8 41 68.3
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.8e-06 55.8 137 31.4


User provided reference genes

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