Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g090040.2 Solanum lycopersicum HOM05D000936 ORTHO05D004612 1.9e-56 222.2 108 100.0
Sopen02g034740 Solanum pennellii HOM05D004017 ORTHO05D004612 2.9e-17 92.0 47 93.6
Sopen02g026850 Solanum pennellii HOM05D000936 ORTHO05D001411 4.2e-08 61.6 40 72.5
CAN.G809.8 Capsicum annuum HOM05D000936 ORTHO05D001411 9.4e-08 60.5 40 70.0
Solyc02g082190.3 Solanum lycopersicum HOM05D000936 ORTHO05D001411 9.4e-08 60.5 40 70.0
PGSC0003DMG400013634 Solanum tuberosum HOM05D000936 ORTHO05D001411 1.2e-07 60.1 40 70.0
Psat4g185840 Pisum sativum HOM05D000936 ORTHO05D001411 2.1e-07 59.3 40 67.5
Aa31LG6G2730 Aethionema arabicum HOM05D000936 ORTHO05D001411 2.7e-07 58.9 40 67.5
BcaC06g30650 Brassica carinata HOM05D000936 ORTHO05D001411 2.7e-07 58.9 40 67.5
BcaNung03500 Brassica carinata HOM05D000936 ORTHO05D001411 2.7e-07 58.9 40 67.5
A01p12030 Brassica napus HOM05D000936 ORTHO05D001411 2.7e-07 58.9 40 67.5
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 2.7e-07 58.9 40 67.5
C01p14330 Brassica napus HOM05D000936 ORTHO05D001411 2.7e-07 58.9 40 67.5
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 2.7e-07 58.9 40 67.5
BolC1t01392H Brassica oleracea HOM05D000936 ORTHO05D001411 2.7e-07 58.9 40 67.5
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 2.7e-07 58.9 40 67.5
BraA01t01145Z Brassica rapa HOM05D000936 ORTHO05D001411 2.7e-07 58.9 40 67.5
Thhalv10024728m.g Eutrema salsugineum HOM05D000936 ORTHO05D001411 2.7e-07 58.9 40 67.5
Cc09_g04460 Coffea canephora HOM05D000936 ORTHO05D001411 3.6e-07 58.5 40 67.5
THA.LOC104811981 Tarenaya hassleriana HOM05D000936 ORTHO05D001411 3.6e-07 58.5 40 65.0
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 4.7e-07 58.2 40 67.5
DCAR_001250 Daucus carota HOM05D000936 ORTHO05D001411 4.7e-07 58.2 40 65.0
Hund02821 Selenicereus undatus HOM05D000936 ORTHO05D001411 4.7e-07 58.2 40 67.5
AL4G30900 Arabidopsis lyrata HOM05D000936 ORTHO05D001411 6.1e-07 57.8 40 65.0
DCAR_003729 Daucus carota HOM05D000936 ORTHO05D001411 6.1e-07 57.8 40 62.5
Nitab4.5_0000075g0010 Nicotiana tabacum HOM05D000936 ORTHO05D001411 6.1e-07 57.8 40 67.5
ECA238G3622 Erigeron canadensis HOM05D000936 ORTHO05D001411 8.0e-07 57.4 40 65.0
Carub.0004s1657 Capsella rubella HOM05D000936 ORTHO05D001411 1.0e-06 57.0 40 65.0
Ciclev10014658m.g Citrus clementina HOM05D000936 ORTHO05D001411 1.0e-06 57.0 40 62.5
Sp4g17170 Schrenkiella parvula HOM05D000936 ORTHO05D001411 1.0e-06 57.0 40 65.0
Sp7g18660 Schrenkiella parvula HOM05D000936 ORTHO05D001411 1.0e-06 57.0 40 65.0
Hund09496 Selenicereus undatus HOM05D000936 ORTHO05D001411 1.0e-06 57.0 40 67.5
THA.LOC104814334 Tarenaya hassleriana HOM05D000936 ORTHO05D001411 1.0e-06 57.0 40 65.0
TWI38G1522 Tripterygium wilfordii HOM05D000936 ORTHO05D001411 1.0e-06 57.0 40 62.5
Actinidia33637 Actinidia chinensis HOM05D000936 ORTHO05D001411 1.4e-06 56.6 40 65.0
AL7G33580 Arabidopsis lyrata HOM05D000936 ORTHO05D001411 1.4e-06 56.6 40 65.0
AT2G34890 Arabidopsis thaliana HOM05D000936 ORTHO05D001411 1.4e-06 56.6 40 65.0
Thhalv10016409m.g Eutrema salsugineum HOM05D000936 ORTHO05D001411 1.4e-06 56.6 40 65.0
Solyc01g056850.3 Solanum lycopersicum HOM05D000936 ORTHO05D001411 1.4e-06 56.6 40 62.5
Sopen01g025830 Solanum pennellii HOM05D000936 ORTHO05D001411 1.4e-06 56.6 40 62.5
GSVIVG01010068001 Vitis vinifera HOM05D000936 ORTHO05D001411 1.4e-06 56.6 40 62.5
Ah.11g050620 Amaranthus hybridus HOM05D000936 ORTHO05D031050 1.8e-06 56.2 40 65.0
AT4G20320 Arabidopsis thaliana HOM05D000936 ORTHO05D001411 1.8e-06 56.2 40 65.0
BcaC02g11572 Brassica carinata HOM05D000936 ORTHO05D001411 1.8e-06 56.2 40 65.0
A05p10790 Brassica napus HOM05D000936 ORTHO05D001411 1.8e-06 56.2 40 65.0
C04p13900 Brassica napus HOM05D000936 ORTHO05D001411 1.8e-06 56.2 40 65.0
BolC4t22978H Brassica oleracea HOM05D000936 ORTHO05D001411 1.8e-06 56.2 40 65.0
BraA05t20023Z Brassica rapa HOM05D000936 ORTHO05D001411 1.8e-06 56.2 40 65.0
HanXRQChr10g0278911 Helianthus annuus HOM05D000936 ORTHO05D001411 1.8e-06 56.2 40 62.5
Lj2C339G6 Lonicera japonica HOM05D000936 ORTHO05D001411 1.8e-06 56.2 40 62.5
BcaB02g09501 Brassica carinata HOM05D000936 ORTHO05D001411 2.3e-06 55.8 40 65.0
BraA03t14318Z Brassica rapa HOM05D000936 ORTHO05D001411 2.3e-06 55.8 40 65.0
Dinv05289 Davidia involucrata HOM05D000936 ORTHO05D001411 2.3e-06 55.8 40 62.5
Manes.16G061200 Manihot esculenta HOM05D000936 ORTHO05D001411 2.3e-06 55.8 40 62.5
Potri.008G080100 Populus trichocarpa HOM05D000936 ORTHO05D001411 2.3e-06 55.8 40 65.0
Sabra08G0059700 Salix brachista HOM05D000936 ORTHO05D001411 2.3e-06 55.8 40 65.0
PGSC0003DMG400021499 Solanum tuberosum HOM05D000936 ORTHO05D001411 2.3e-06 55.8 40 62.5
Aa31LG6G12050 Aethionema arabicum HOM05D000936 ORTHO05D001411 3.0e-06 55.5 40 62.5
CARHR227140 Cardamine hirsuta HOM05D000936 ORTHO05D001411 3.0e-06 55.5 40 62.5
Potri.001G073100 Populus trichocarpa HOM05D000936 ORTHO05D001411 3.0e-06 55.5 40 62.5
MSTRG.16383 Avicennia marina HOM05D000936 ORTHO05D001411 4.0e-06 55.1 40 62.5
Haze_05176 Corylus avellana HOM05D000936 ORTHO05D001411 4.0e-06 55.1 40 62.5
Lj3g0003356 Lotus japonicus HOM05D000936 ORTHO05D001411 4.0e-06 55.1 40 65.0
Lalb_Chr01g0007271 Lupinus albus HOM05D000936 ORTHO05D001411 4.0e-06 55.1 40 65.0
Lalb_Chr01g0015681 Lupinus albus HOM05D000936 ORTHO05D001411 4.0e-06 55.1 40 65.0
Lalb_Chr25g0284031 Lupinus albus HOM05D000936 ORTHO05D001411 4.0e-06 55.1 40 65.0
Medtr8g446910 Medicago truncatula HOM05D000936 ORTHO05D001411 4.0e-06 55.1 40 62.5
THA.LOC104812695 Tarenaya hassleriana HOM05D000936 ORTHO05D001411 4.0e-06 55.1 40 62.5
TAR624G0626 Trochodendron aralioides HOM05D000936 ORTHO05D001411 4.0e-06 55.1 40 62.5
AL1G45000 Arabidopsis lyrata HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 60.0
AL3G24340 Arabidopsis lyrata HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 62.5
BcaB06g25525 Brassica carinata HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 62.5
BcaC05g29249 Brassica carinata HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 62.5
A05p36830 Brassica napus HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 62.5
BolC5t34193H Brassica oleracea HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 62.5
BraA05t22484Z Brassica rapa HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 62.5
Carub.0001s2913 Capsella rubella HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 60.0
Carub.0003s1202 Capsella rubella HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 62.5
CARHR030290 Cardamine hirsuta HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 60.0
CARHR087180 Cardamine hirsuta HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 62.5
Migut.M02038 Erythranthe guttata HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 62.5
THA.LOC104826408 Tarenaya hassleriana HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 65.0
HPP92_006292 Vanilla planifolia HOM05D000936 ORTHO05D015151 5.2e-06 54.7 40 62.5
HPP92_006317 Vanilla planifolia HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 62.5
HPP92_006319 Vanilla planifolia HOM05D000936 ORTHO05D001411 5.2e-06 54.7 40 62.5
CSS0005935 Camellia sinensis var. sinensis HOM05D000936 ORTHO05D001411 6.7e-06 54.3 40 62.5
Ca_22539_v3 Cicer arietinum L. HOM05D000936 ORTHO05D001411 6.7e-06 54.3 40 60.0
Glyma.08G161000 Glycine max HOM05D000936 ORTHO05D001411 6.7e-06 54.3 40 62.5
Lsat_1_v5_gn_3_103521 Lactuca sativa HOM05D000936 ORTHO05D001411 6.7e-06 54.3 40 60.0
A09p35490 Brassica napus HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 62.5
BraA09t39074Z Brassica rapa HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 62.5
Carub.0007s2086 Capsella rubella HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 60.0
CiPaw.09G141500 Carya illinoinensis HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 60.0
CiPaw.10G108900 Carya illinoinensis HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 60.0
AUR62028617 Chenopodium quinoa HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 62.5
AUR62032341 Chenopodium quinoa HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 62.5
COL.COLO4_32280 Corchorus olitorius HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 62.5
Dinv42445 Davidia involucrata HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 62.5
Glyma.15G266600 Glycine max HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 62.5
Manes.03G076400 Manihot esculenta HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 62.5
PGR042G0724 Punica granatum HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 60.0
Rhsim13G0137100 Rhododendron simsii HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 60.0
Sabra10G0135700 Salix brachista HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 62.5
HPP92_024148 Vanilla planifolia HOM05D000936 ORTHO05D015151 8.8e-06 53.9 40 62.5
HPP92_024198 Vanilla planifolia HOM05D000936 ORTHO05D001411 8.8e-06 53.9 40 62.5


User provided reference genes

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