Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.5e-107 392.1 195 100.0
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 4.7e-90 334.7 169 97.6
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.6e-80 302.4 170 88.8
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 1.2e-58 230.3 167 71.9
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.2e-58 230.3 167 71.9
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.1e-58 229.6 171 70.8
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.8e-57 226.5 168 68.5
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.8e-57 226.5 167 69.5
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 6.8e-57 224.6 168 70.8
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 2.0e-56 223.0 166 66.3
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 7.5e-56 221.1 179 65.4
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 1.1e-54 217.2 168 69.0
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 7.0e-54 214.5 167 62.9
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 1.6e-53 213.4 168 64.9
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 4.6e-53 211.8 170 62.9
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 6.0e-53 211.5 168 65.5
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 6.0e-53 211.5 168 64.9
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 6.0e-53 211.5 164 65.9
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 1.0e-52 210.7 169 63.9
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 1.3e-52 210.3 167 65.3
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.3e-52 210.3 168 64.3
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 2.3e-52 209.5 168 63.7
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 3.0e-52 209.1 168 63.1
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 3.0e-52 209.1 168 62.5
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 5.0e-52 208.4 165 63.6
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 5.0e-52 208.4 168 62.5
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 8.6e-52 207.6 168 63.1
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 1.5e-51 206.8 168 62.5
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.5e-51 206.8 170 62.4
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.5e-51 206.8 164 64.0
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 1.9e-51 206.5 170 64.1
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.9e-51 206.5 169 61.5
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.9e-51 206.5 168 62.5
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.9e-51 206.5 167 61.1
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.5e-51 206.1 166 62.7
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 2.5e-51 206.1 165 65.5
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 3.3e-51 205.7 166 62.7
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 4.3e-51 205.3 168 64.3
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 5.6e-51 204.9 167 62.9
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 5.6e-51 204.9 168 63.1
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 7.3e-51 204.5 181 59.1
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 7.3e-51 204.5 166 60.2
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 9.5e-51 204.1 168 60.1
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.2e-50 203.8 169 61.5
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.6e-50 203.4 169 60.9
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 1.6e-50 203.4 168 62.5
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 1.6e-50 203.4 168 63.1
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 2.1e-50 203.0 168 61.9
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.8e-50 202.6 163 66.9
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 3.6e-50 202.2 166 61.4
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 4.7e-50 201.8 168 64.3
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 6.2e-50 201.4 168 60.7
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 8.1e-50 201.1 164 61.6
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 8.1e-50 201.1 166 60.2
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 8.1e-50 201.1 167 59.9
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 1.1e-49 200.7 167 61.7
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 1.1e-49 200.7 164 62.2
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 1.4e-49 200.3 164 63.4
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.4e-49 200.3 168 60.7
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.4e-49 200.3 171 60.2
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 1.8e-49 199.9 169 59.2
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.3e-49 199.5 164 62.2
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 2.3e-49 199.5 168 61.3
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 2.3e-49 199.5 163 62.6
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 3.1e-49 199.1 168 61.3
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 4.0e-49 198.7 163 62.0
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 4.0e-49 198.7 163 60.1
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 6.8e-49 198.0 169 61.5
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 8.9e-49 197.6 166 61.4
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.2e-48 197.2 163 59.5
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 1.2e-48 197.2 167 58.7
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 1.5e-48 196.8 170 60.0
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.5e-48 196.8 168 60.1
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 2.0e-48 196.4 168 57.7
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.6e-48 196.1 165 60.6
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 5.8e-48 194.9 169 58.6
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 9.9e-48 194.1 163 58.9
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.3e-47 193.7 191 55.5
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.3e-47 193.7 166 59.0
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 2.2e-47 193.0 171 57.9
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 2.9e-47 192.6 168 56.5
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 6.4e-47 191.4 166 57.2
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 1.1e-46 190.7 168 56.5
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 1.1e-46 190.7 162 58.6
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 2.4e-46 189.5 163 59.5
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 4.1e-46 188.7 163 61.3
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 9.2e-46 187.6 168 58.3
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.2e-45 187.2 174 55.2
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.2e-45 187.2 180 54.4
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 1.6e-45 186.8 167 56.3
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 2.1e-45 186.4 154 63.6
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.7e-44 183.3 148 61.5
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 2.3e-44 183.0 194 50.5
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.8e-42 176.0 165 57.0
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.8e-42 176.0 163 55.8
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 6.8e-41 171.4 161 53.4
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.2e-40 170.6 164 53.7
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 1.2e-40 170.6 145 64.1
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-40 170.2 164 52.4
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 6.4e-39 164.9 162 51.9
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 6.4e-39 164.9 167 53.9
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 1.1e-38 164.1 165 50.9
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.1e-38 164.1 144 64.6
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 1.4e-38 163.7 145 61.4
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 2.4e-38 162.9 162 51.2
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 4.1e-38 162.2 164 50.6
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 1.2e-37 160.6 165 50.9
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 7.8e-37 157.9 144 61.1
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.6e-36 154.5 143 61.5
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 5.6e-35 151.8 166 50.6
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 2.8e-34 149.4 132 59.8
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.0e-32 143.3 117 66.7
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 6.4e-31 138.3 173 45.7
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.9e-30 136.7 166 45.2
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 1.9e-30 136.7 120 55.8
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 2.4e-30 136.3 173 45.7
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 7.1e-30 134.8 173 45.1
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 1.7e-28 130.2 153 47.1
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 3.9e-28 129.0 162 43.2
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 6.6e-28 128.3 168 44.0
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.9e-27 126.7 164 43.9
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 3.3e-27 125.9 142 52.8
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 4.0e-25 119.0 107 61.7
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 1.7e-23 113.6 145 47.6
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-22 110.9 162 42.0
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 9.3e-22 107.8 145 45.5
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 1.2e-16 90.9 66 60.6
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 4.5e-16 89.0 87 50.6
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 6.4e-15 85.1 113 47.8
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 2.4e-14 83.2 48 70.8
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 4.2e-14 82.4 75 54.7
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 1.2e-13 80.9 76 57.9
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 2.1e-13 80.1 183 29.5
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.0e-12 77.8 57 61.4
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 6.2e-10 68.6 159 28.9
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.4e-09 67.4 76 44.7
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 3.1e-09 66.2 76 46.1
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 3.4e-08 62.8 77 44.2


User provided reference genes

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