Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 3.9e-180 635.2 452 100.0
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 1.7e-175 619.8 452 93.1
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 8.7e-148 527.7 623 68.7
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 4.8e-138 495.4 454 70.9
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.9e-131 473.4 458 66.8
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.9e-118 430.3 458 63.5
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 1.6e-96 357.5 454 66.1
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 4.7e-93 345.9 471 56.5
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 2.3e-92 343.6 472 54.2
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 3.0e-92 343.2 471 51.6
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 5.2e-92 342.4 476 51.9
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 7.5e-91 338.6 454 53.7
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 7.0e-89 332.0 469 51.4
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 3.5e-88 329.7 458 53.3
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 7.3e-86 322.0 465 52.9
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 2.1e-85 320.5 457 50.5
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 2.8e-85 320.1 456 59.4
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 3.6e-85 319.7 453 50.8
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 6.1e-85 318.9 467 50.5
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 4.0e-84 316.2 484 51.9
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 4.0e-84 316.2 456 50.2
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 5.2e-84 315.8 457 51.6
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 8.9e-84 315.1 481 47.6
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 1.5e-83 314.3 464 49.8
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 2.0e-83 313.9 466 50.9
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 2.0e-83 313.9 480 50.6
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 2.6e-83 313.5 464 50.2
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 7.5e-83 312.0 485 50.7
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 7.5e-83 312.0 475 52.2
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 1.7e-82 310.8 483 54.2
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 6.4e-82 308.9 455 51.6
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 8.3e-82 308.5 475 52.4
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 9.2e-81 305.1 475 48.2
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 9.2e-81 305.1 467 48.0
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 1.6e-80 304.3 469 49.3
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 2.7e-80 303.5 485 49.5
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 1.0e-79 301.6 451 51.9
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 1.0e-79 301.6 493 46.2
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 2.3e-79 300.4 458 48.7
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 3.0e-79 300.1 493 47.3
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 3.0e-79 300.1 493 47.3
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 3.0e-79 300.1 483 46.2
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 8.6e-79 298.5 550 46.7
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 8.6e-79 298.5 452 53.3
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 1.1e-78 298.1 502 45.8
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 1.1e-78 298.1 506 42.9
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 1.9e-78 297.4 452 53.1
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 5.6e-78 295.8 498 46.6
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 7.3e-78 295.4 466 51.7
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 1.2e-77 294.7 452 53.1
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.6e-77 294.3 460 48.3
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 2.1e-77 293.9 467 51.2
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 2.1e-77 293.9 452 52.9
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 6.2e-77 292.4 465 46.7
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 1.1e-76 291.6 509 57.2
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.1e-76 291.6 478 51.9
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.1e-76 291.6 478 51.9
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 2.3e-76 290.4 455 56.5
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 6.8e-76 288.9 582 40.2
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 1.2e-75 288.1 467 50.7
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 1.5e-75 287.7 471 51.2
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 2.6e-75 287.0 454 55.1
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 7.5e-75 285.4 472 51.1
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 3.7e-74 283.1 450 55.6
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 6.4e-74 282.3 455 51.2
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 1.1e-73 281.6 509 46.6
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 2.1e-72 277.3 555 51.7
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 4.6e-72 276.2 466 50.6
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 1.7e-71 274.2 487 44.4
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 6.6e-71 272.3 475 48.4
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 6.6e-71 272.3 589 44.7
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 1.5e-70 271.2 540 56.5
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 1.5e-70 271.2 474 52.7
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 7.3e-70 268.9 514 45.7
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 2.1e-69 267.3 526 47.5
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 3.1e-68 263.5 469 47.5
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 1.5e-67 261.2 489 48.9
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 5.8e-67 259.2 496 53.6
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 2.2e-66 257.3 482 47.9
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 3.7e-66 256.5 639 43.2
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.7e-66 256.5 639 43.5
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.4e-65 254.6 584 45.5
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 7.1e-65 252.3 609 41.2
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 9.2e-65 251.9 543 45.5
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 1.6e-64 251.1 528 46.2
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 6.0e-64 249.2 638 43.1
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 1.7e-63 247.7 517 39.5
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 1.1e-62 245.0 539 51.0
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 4.3e-62 243.0 540 42.4
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 1.2e-61 241.5 473 45.0
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 3.6e-61 240.0 533 43.9
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 1.8e-60 237.7 472 44.9
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 1.5e-59 234.6 607 48.8
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 2.0e-59 234.2 472 44.1
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 7.6e-59 232.3 515 42.3
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 8.4e-58 228.8 625 44.3
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 7.1e-57 225.7 170 76.5
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.6e-56 224.6 239 59.8
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 6.6e-55 219.2 530 42.3
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 1.5e-54 218.0 547 39.5
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.3e-54 216.5 451 49.9
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 1.9e-49 201.1 193 64.2
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 2.4e-49 200.7 172 66.3
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 3.1e-44 183.7 485 40.0
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 2.5e-38 164.1 176 54.5
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 9.6e-38 162.2 516 46.3
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.1e-37 161.0 360 42.5
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 1.4e-36 158.3 183 56.3
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.7e-34 151.4 91 86.8
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 6.4e-34 149.4 95 85.3
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 1.1e-33 148.7 178 52.8
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 3.2e-33 147.1 161 59.0
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.5e-33 146.4 425 32.5
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.2e-32 145.2 89 86.5
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 3.9e-31 140.2 82 90.2
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 8.7e-31 139.0 151 55.6
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 1.3e-26 125.2 369 39.3
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 6.5e-26 122.9 96 72.9
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 4.2e-25 120.2 103 62.1
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 9.3e-25 119.0 98 70.4
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 4.8e-21 106.7 96 64.6
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 5.3e-20 103.2 174 36.8
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.0e-19 101.3 422 38.9
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.3e-18 98.6 62 83.9
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 3.8e-18 97.1 154 45.5
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 4.2e-17 93.6 82 68.3
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 3.6e-16 90.5 53 84.9
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 4.6e-16 90.1 60 78.3
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.3e-15 87.8 95 50.5
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 2.5e-14 84.3 183 35.0
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 2.4e-12 77.8 68 61.8
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.1e-12 77.4 91 48.4
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.9e-11 73.2 80 47.5
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 2.1e-08 64.7 69 60.9
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 3.6e-08 63.9 51 68.6
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 3.9e-07 60.5 171 26.3
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 2.0e-06 58.2 63 63.5


User provided reference genes

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