Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g082630.2 Solanum lycopersicum HOM05D001343 ORTHO05D037694 2.2e-196 688.7 335 100.0
PGSC0003DMG400001569 Solanum tuberosum HOM05D001343 ORTHO05D002008 2.2e-18 97.4 64 70.3
Solyc02g082750.4 Solanum lycopersicum HOM05D001343 ORTHO05D002008 1.8e-17 94.4 64 68.8
Sopen02g027510 Solanum pennellii HOM05D001343 ORTHO05D002008 1.8e-17 94.4 64 68.8
CSS0015744 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D002008 1.5e-16 91.3 62 66.1
CSS0026297 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D002008 1.5e-16 91.3 62 66.1
CAN.G1238.2 Capsicum annuum HOM05D001343 ORTHO05D002008 1.5e-16 91.3 51 82.4
Nitab4.5_0000702g0150 Nicotiana tabacum HOM05D001343 ORTHO05D002008 2.0e-16 90.9 51 78.4
Nitab4.5_0006960g0020 Nicotiana tabacum HOM05D001343 ORTHO05D002008 2.0e-16 90.9 51 78.4
Peaxi162Scf01051g00136 Petunia axillaris HOM05D001343 ORTHO05D002008 2.0e-16 90.9 51 78.4
SalBow5G3849 Salvia bowleyana HOM05D001343 ORTHO05D002008 2.6e-16 90.5 98 51.0
MSTRG.3624 Avicennia marina HOM05D001343 ORTHO05D002008 5.9e-16 89.4 62 62.9
Dinv40179 Davidia involucrata HOM05D001343 ORTHO05D002008 5.9e-16 89.4 62 62.9
Actinidia22904 Actinidia chinensis HOM05D001343 ORTHO05D002008 7.7e-16 89.0 51 76.5
Cc07_g11740 Coffea canephora HOM05D001343 ORTHO05D002008 7.7e-16 89.0 51 76.5
Lalb_Chr16g0377231 Lupinus albus HOM05D001343 ORTHO05D002008 7.7e-16 89.0 64 62.5
CAN.G328.14 Capsicum annuum HOM05D001343 ORTHO05D002008 1.0e-15 88.6 51 74.5
Oeu012448.1 Olea europaea HOM05D001343 ORTHO05D002008 1.3e-15 88.2 51 74.5
Rhsim08G0027700 Rhododendron simsii HOM05D001343 ORTHO05D002008 1.7e-15 87.8 51 72.5
DCAR_010124 Daucus carota HOM05D001343 ORTHO05D002008 2.2e-15 87.4 62 62.9
Migut.L00728 Erythranthe guttata HOM05D001343 ORTHO05D002008 2.2e-15 87.4 62 61.3
Nitab4.5_0002850g0090 Nicotiana tabacum HOM05D001343 ORTHO05D002008 2.9e-15 87.0 51 72.5
Duzib147G0778 Durio zibethinus HOM05D001343 ORTHO05D002008 6.5e-15 85.9 59 64.4
TWI73G0978 Tripterygium wilfordii HOM05D001343 ORTHO05D002008 6.5e-15 85.9 62 61.3
Hma1.2p1_0085F.1_g044840 Hydrangea macrophylla HOM05D001343 ORTHO05D002008 8.5e-15 85.5 53 67.9
Manes.02G113400 Manihot esculenta HOM05D001343 ORTHO05D002008 8.5e-15 85.5 62 59.7
Solyc02g038819.1 Solanum lycopersicum HOM05D001343 ORTHO05D002008 8.5e-15 85.5 51 72.5
Sopen02g012690 Solanum pennellii HOM05D001343 ORTHO05D002008 8.5e-15 85.5 51 72.5
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 8.5e-15 85.5 51 70.6
vmacro18458 Vaccinium macrocarpon HOM05D001343 ORTHO05D002008 8.5e-15 85.5 51 70.6
THA.LOC104821353 Tarenaya hassleriana HOM05D001343 ORTHO05D002008 1.1e-14 85.1 51 70.6
Phvul.002G115600 Phaseolus vulgaris HOM05D001343 ORTHO05D002008 1.4e-14 84.7 51 70.6
VMungo1215G1069 Vigna mungo HOM05D001343 ORTHO05D002008 1.4e-14 84.7 51 70.6
EL10Ac4g07687 Beta vulgaris HOM05D001343 ORTHO05D002008 1.9e-14 84.3 51 70.6
Ca_24972_v3 Cicer arietinum L. HOM05D001343 ORTHO05D002008 1.9e-14 84.3 51 70.6
Duzib187G1854 Durio zibethinus HOM05D001343 ORTHO05D002008 1.9e-14 84.3 59 62.7
ECA246G1836 Erigeron canadensis HOM05D001343 ORTHO05D002008 1.9e-14 84.3 51 70.6
Glyma.04G121500 Glycine max HOM05D001343 ORTHO05D002008 1.9e-14 84.3 51 70.6
Glyma.11G085100 Glycine max HOM05D001343 ORTHO05D002008 1.9e-14 84.3 51 70.6
Manes.17G003900 Manihot esculenta HOM05D001343 ORTHO05D002008 1.9e-14 84.3 61 60.7
Psat2g149280 Pisum sativum HOM05D001343 ORTHO05D002008 1.9e-14 84.3 51 70.6
THA.LOC104819161 Tarenaya hassleriana HOM05D001343 ORTHO05D002008 1.9e-14 84.3 51 68.6
TPR.G8380 Trifolium pratense HOM05D001343 ORTHO05D002008 1.9e-14 84.3 51 70.6
Cpa.g.sc6.341 Carica papaya HOM05D001343 ORTHO05D002008 2.5e-14 84.0 51 70.6
FAN23G2867 Fragaria x ananassa HOM05D001343 ORTHO05D002008 2.5e-14 84.0 62 61.3
FAN26G0498 Fragaria x ananassa HOM05D001343 ORTHO05D002008 2.5e-14 84.0 62 61.3
FAN28G1835 Fragaria x ananassa HOM05D001343 ORTHO05D002008 2.5e-14 84.0 62 61.3
Manes.01G154500 Manihot esculenta HOM05D001343 ORTHO05D002008 2.5e-14 84.0 62 59.7
Prupe.7G181200 Prunus persica HOM05D001343 ORTHO05D002008 2.5e-14 84.0 62 61.3
RcHm_v2.0_Chr2g0097371 Rosa chinensis HOM05D001343 ORTHO05D002008 2.5e-14 84.0 62 61.3
Ciclev10025215m.g Citrus clementina HOM05D001343 ORTHO05D002008 4.2e-14 83.2 62 59.7
Haze_03668 Corylus avellana HOM05D001343 ORTHO05D002008 4.2e-14 83.2 51 72.5
DCAR_014048 Daucus carota HOM05D001343 ORTHO05D002008 4.2e-14 83.2 51 70.6
Cfa007070 Carpinus fangiana HOM05D001343 ORTHO05D002008 5.5e-14 82.8 59 64.4
FvH4_1g10490 Fragaria vesca HOM05D001343 ORTHO05D002008 5.5e-14 82.8 62 59.7
FAN19G0245 Fragaria x ananassa HOM05D001343 ORTHO05D002008 5.5e-14 82.8 62 59.7
Lalb_Chr09g0334331 Lupinus albus HOM05D001343 ORTHO05D002008 5.5e-14 82.8 51 68.6
BcaB01g00512 Brassica carinata HOM05D001343 ORTHO05D002008 7.2e-14 82.4 51 68.6
A09p44620 Brassica napus HOM05D001343 ORTHO05D002008 7.2e-14 82.4 51 68.6
C08p26720 Brassica napus HOM05D001343 ORTHO05D002008 7.2e-14 82.4 51 68.6
CiPaw.08G180900 Carya illinoinensis HOM05D001343 ORTHO05D002008 7.2e-14 82.4 51 70.6
COL.COLO4_22544 Corchorus olitorius HOM05D001343 ORTHO05D002008 7.2e-14 82.4 51 68.6
ECA238G3197 Erigeron canadensis HOM05D001343 ORTHO05D002008 7.2e-14 82.4 51 66.7
Lj4A234G53 Lonicera japonica HOM05D001343 ORTHO05D002008 7.2e-14 82.4 62 61.3
QL06p052840 Quercus lobata HOM05D001343 ORTHO05D002008 7.2e-14 82.4 51 68.6
QL06p053730 Quercus lobata HOM05D001343 ORTHO05D002008 7.2e-14 82.4 51 68.6
TAR376G0462 Trochodendron aralioides HOM05D001343 ORTHO05D002008 7.2e-14 82.4 62 58.1
unitig_46.g18716 Utricularia gibba HOM05D001343 ORTHO05D002008 7.2e-14 82.4 51 70.6
Lj2g0005015 Lotus japonicus HOM05D001343 ORTHO05D002008 9.4e-14 82.0 51 68.6
Lalb_Chr05g0211871 Lupinus albus HOM05D001343 ORTHO05D002008 9.4e-14 82.0 51 68.6
GSVIVG01026652001 Vitis vinifera HOM05D001343 ORTHO05D002008 9.4e-14 82.0 62 59.7
Lj2A497G57 Lonicera japonica HOM05D001343 ORTHO05D002008 1.2e-13 81.6 51 66.7
MD02G1118500 Malus domestica HOM05D001343 ORTHO05D002008 1.2e-13 81.6 62 59.7
arahy.Tifrunner.gnm1.ann1.YHY8UM Arachis hypogaea HOM05D001343 ORTHO05D002008 1.6e-13 81.3 51 66.7
arahy.Tifrunner.gnm1.ann1.Z935MC Arachis hypogaea HOM05D001343 ORTHO05D002008 1.6e-13 81.3 51 66.7
BcaNung00384 Brassica carinata HOM05D001343 ORTHO05D002008 1.6e-13 81.3 51 66.7
Glyma.01G159400 Glycine max HOM05D001343 ORTHO05D002008 1.6e-13 81.3 51 68.6
Medtr5g023960 Medicago truncatula HOM05D001343 ORTHO05D002008 1.6e-13 81.3 51 68.6
Sc07g0001350 Simmondsia chinensis HOM05D001343 ORTHO05D002008 1.6e-13 81.3 51 68.6
Thecc.01G006400 Theobroma cacao HOM05D001343 ORTHO05D002008 1.6e-13 81.3 51 68.6
arahy.Tifrunner.gnm1.ann1.RFZ0FJ Arachis hypogaea HOM05D001343 ORTHO05D002008 2.1e-13 80.9 51 68.6
arahy.Tifrunner.gnm1.ann1.XQV0C2 Arachis hypogaea HOM05D001343 ORTHO05D002008 2.1e-13 80.9 51 68.6
Lsat_1_v5_gn_8_112321 Lactuca sativa HOM05D001343 ORTHO05D002008 2.1e-13 80.9 51 66.7
Nn1g09409 Nelumbo nucifera HOM05D001343 ORTHO05D002008 2.1e-13 80.9 64 57.8
Phvul.003G269400 Phaseolus vulgaris HOM05D001343 ORTHO05D002008 2.1e-13 80.9 51 66.7
TAR628G0471 Trochodendron aralioides HOM05D001343 ORTHO05D002008 2.1e-13 80.9 62 56.5
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 2.7e-13 80.5 51 66.7
Lsat_1_v5_gn_2_73481 Lactuca sativa HOM05D001343 ORTHO05D002008 2.7e-13 80.5 51 66.7
Potri.005G100500 Populus trichocarpa HOM05D001343 ORTHO05D002008 3.6e-13 80.1 51 64.7
VMungo0251G1469 Vigna mungo HOM05D001343 ORTHO05D002008 3.6e-13 80.1 51 64.7
AL5G31900 Arabidopsis lyrata HOM05D001343 ORTHO05D002008 4.7e-13 79.7 51 64.7
Gohir.A02G177400 Gossypium hirsutum HOM05D001343 ORTHO05D002008 4.7e-13 79.7 51 66.7
Gohir.D03G002500 Gossypium hirsutum HOM05D001343 ORTHO05D002008 4.7e-13 79.7 51 66.7
Gorai.003G002700 Gossypium raimondii HOM05D001343 ORTHO05D002008 4.7e-13 79.7 51 66.7
Hund03606 Selenicereus undatus HOM05D001343 ORTHO05D002008 4.7e-13 79.7 51 66.7
Atru.chr3.982 Acer truncatum HOM05D001343 ORTHO05D002008 6.1e-13 79.3 51 66.7
AL8G45600 Arabidopsis lyrata HOM05D001343 ORTHO05D002008 6.1e-13 79.3 51 64.7
AUR62002843 Chenopodium quinoa HOM05D001343 ORTHO05D002008 6.1e-13 79.3 51 66.7
AUR62037308 Chenopodium quinoa HOM05D001343 ORTHO05D002008 6.1e-13 79.3 51 66.7
Thhalv10010223m.g Eutrema salsugineum HOM05D001343 ORTHO05D002008 6.1e-13 79.3 51 64.7
HanXRQChr16g0531841 Helianthus annuus HOM05D001343 ORTHO05D002008 6.1e-13 79.3 51 62.7
CANSAT25G0770 Cannabis sativa HOM05D001343 ORTHO05D002008 7.9e-13 79.0 51 68.6
Carub.0008s2849 Capsella rubella HOM05D001343 ORTHO05D002008 7.9e-13 79.0 51 64.7
Gohir.D10G088900 Gossypium hirsutum HOM05D001343 ORTHO05D002008 7.9e-13 79.0 56 58.9
Gorai.011G097800 Gossypium raimondii HOM05D001343 ORTHO05D002008 7.9e-13 79.0 56 58.9
HanXRQChr15g0489761 Helianthus annuus HOM05D001343 ORTHO05D002008 7.9e-13 79.0 51 64.7
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 1.0e-12 78.6 51 66.7
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 1.0e-12 78.6 51 66.7
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 1.0e-12 78.6 51 66.7
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 1.0e-12 78.6 51 66.7
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 1.0e-12 78.6 51 66.7
MELO3C007975.2 Cucumis melo HOM05D001343 ORTHO05D002008 1.0e-12 78.6 51 66.7
MD15G1232800 Malus domestica HOM05D001343 ORTHO05D002008 1.0e-12 78.6 62 58.1
Hund19704 Selenicereus undatus HOM05D001343 ORTHO05D002008 1.0e-12 78.6 51 66.7
CsaV3_6G047860 Cucumis sativus L. HOM05D001343 ORTHO05D002008 1.4e-12 78.2 51 64.7
Eucgr.I02229 Eucalyptus grandis HOM05D001343 ORTHO05D002008 1.4e-12 78.2 51 62.7
Aa31LG1G25920 Aethionema arabicum HOM05D001343 ORTHO05D002008 2.3e-12 77.4 51 64.7
AT5G66020 Arabidopsis thaliana HOM05D001343 ORTHO05D002008 2.3e-12 77.4 51 62.7
A01p23440 Brassica napus HOM05D001343 ORTHO05D002008 2.3e-12 77.4 51 64.7
CARHR161040 Cardamine hirsuta HOM05D001343 ORTHO05D002008 2.3e-12 77.4 51 64.7
Migut.H02204 Erythranthe guttata HOM05D001343 ORTHO05D002008 2.3e-12 77.4 62 56.5
Nn5g30965 Nelumbo nucifera HOM05D001343 ORTHO05D002008 2.3e-12 77.4 51 64.7
Sp5g10780 Schrenkiella parvula HOM05D001343 ORTHO05D002008 2.3e-12 77.4 51 64.7
Glyma.09G198950 Glycine max HOM05D001343 ORTHO05D002008 3.0e-12 77.0 47 68.1
CARHR281740 Cardamine hirsuta HOM05D001343 ORTHO05D002008 3.9e-12 76.6 51 62.7
Aqoxy6G01681 Aquilegia oxysepala HOM05D001343 ORTHO05D002008 5.1e-12 76.3 62 54.8
PGR119G2034 Punica granatum HOM05D001343 ORTHO05D002008 5.1e-12 76.3 51 62.7
Sed0018868 Sechium edule HOM05D001343 ORTHO05D002008 5.1e-12 76.3 51 62.7
Carub.0005s1784 Capsella rubella HOM05D001343 ORTHO05D002008 6.7e-12 75.9 51 62.7
AT3G51460 Arabidopsis thaliana HOM05D001343 ORTHO05D002008 8.8e-12 75.5 51 62.7
Sp2g30670 Schrenkiella parvula HOM05D001343 ORTHO05D002008 8.8e-12 75.5 51 62.7
SGA_v2.0_scaffold2G00957 Striga asiatica HOM05D001343 ORTHO05D002008 8.8e-12 75.5 52 65.4
Gohir.A10G099200 Gossypium hirsutum HOM05D001343 ORTHO05D002008 1.5e-11 74.7 56 55.4
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 2.0e-11 74.3 54 59.3
Sed0003910 Sechium edule HOM05D001343 ORTHO05D002008 2.6e-11 73.9 51 60.8
C01p29070 Brassica napus HOM05D001343 ORTHO05D002008 3.3e-11 73.6 51 60.8
BolC1t02839H Brassica oleracea HOM05D001343 ORTHO05D002008 3.3e-11 73.6 51 60.8
Aa31LG4G10560 Aethionema arabicum HOM05D001343 ORTHO05D002008 5.7e-11 72.8 49 61.2
SalBow3G4186 Salvia bowleyana HOM05D001343 ORTHO05D002008 2.2e-10 70.9 51 62.7
ATR0661G081 Amborella trichopoda HOM05D001343 ORTHO05D002008 2.8e-10 70.5 51 58.8
ATR0686G064 Amborella trichopoda HOM05D001343 ORTHO05D002008 2.8e-10 70.5 51 58.8
PSO541G0001 Papaver somniferum HOM05D001343 ORTHO05D002008 2.8e-10 70.5 62 48.4
PSO675G7328 Papaver somniferum HOM05D001343 ORTHO05D002008 2.8e-10 70.5 62 48.4
CDE04G1269 Ceratophyllum demersum HOM05D001343 ORTHO05D002008 3.7e-10 70.1 51 58.8
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 6.3e-10 69.3 157 33.1
Solyc02g082770.3 Solanum lycopersicum HOM05D001343 ORTHO05D037694 6.3e-10 69.3 40 82.5
Nitab4.5_0001467g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 8.2e-10 68.9 148 33.8
Nitab4.5_0000467g0020 Nicotiana tabacum HOM05D001343 ORTHO05D002008 2.4e-09 67.4 78 44.9
Solyc01g150172.1 Solanum lycopersicum HOM05D011612 ORTHO05D013629 3.1e-09 67.0 57 66.7
Nitab4.5_0001467g0040 Nicotiana tabacum HOM05D004017 ORTHO05D004612 4.1e-09 66.6 61 57.4
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 9.1e-09 65.5 149 30.9
Zm00001eb243810 Zea mays HOM05D001343 ORTHO05D002008 1.5e-08 64.7 51 52.9
Nitab4.5_0004608g0010 Nicotiana tabacum HOM05D004017 ORTHO05D004612 2.6e-08 63.9 170 30.6
SEGI_19241 Sequoiadendron giganteum HOM05D001343 ORTHO05D002008 3.4e-08 63.5 51 51.0
Zm00001eb181990 Zea mays HOM05D001343 ORTHO05D002008 3.4e-08 63.5 51 52.9
SMO146G0015 Selaginella moellendorffii HOM05D001343 ORTHO05D002008 4.5e-08 63.2 51 56.9
SMO271G0030 Selaginella moellendorffii HOM05D001343 ORTHO05D002008 5.9e-08 62.8 51 52.9
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 5.9e-08 62.8 149 30.2
PGSC0003DMG402004033 Solanum tuberosum HOM05D001343 ORTHO05D037694 7.7e-08 62.4 76 56.6
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 1.3e-07 61.6 169 26.6
Os02g0554300 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D002008 2.2e-07 60.8 51 49.0
SMO361G0082 Selaginella moellendorffii HOM05D055829 ORTHO05D002008 2.9e-07 60.5 70 41.4
Lsat_1_v5_gn_3_68101 Lactuca sativa HOM05D001343 ORTHO05D002008 3.8e-07 60.1 51 58.8
CSS0032440 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D002008 8.5e-07 58.9 36 72.2
Peaxi162Scf00580g00310 Petunia axillaris HOM05D001343 ORTHO05D002008 8.5e-07 58.9 51 56.9
CSS0042720 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D002008 1.1e-06 58.5 36 72.2
Pp3c3_31010 Physcomitrium patens HOM05D001343 ORTHO05D002008 1.1e-06 58.5 51 47.1
SEGI_20121 Sequoiadendron giganteum HOM05D001343 ORTHO05D002008 2.5e-06 57.4 51 43.1
Mapoly0029s0078 Marchantia polymorpha HOM05D001343 ORTHO05D002008 3.2e-06 57.0 51 51.0
VMungo0251G0854 Vigna mungo HOM05D001343 ORTHO05D002008 5.5e-06 56.2 40 62.5
Sabra05G0083100 Salix brachista HOM05D001343 ORTHO05D002008 7.2e-06 55.8 51 51.0
CBR_g32128 Chara braunii HOM05D001343 ORTHO05D002008 9.4e-06 55.5 59 44.1
Pp3c8_7650 Physcomitrium patens HOM05D001343 ORTHO05D002008 9.4e-06 55.5 51 45.1
VMungo1309G1425 Vigna mungo HOM05D001343 ORTHO05D008631 9.4e-06 55.5 36 66.7


User provided reference genes

Program Settings