Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.0e-134 483.4 242 100.0
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 1.6e-100 369.8 184 99.5
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 1.1e-99 367.1 184 98.9
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 2.9e-97 359.0 184 96.7
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 4.6e-95 351.7 184 92.9
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 6.0e-95 351.3 183 93.4
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 6.6e-94 347.8 184 92.9
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 3.9e-86 322.0 182 85.2
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 8.7e-86 320.9 182 85.7
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 3.3e-85 318.9 182 85.2
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.3e-85 318.9 183 84.7
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 1.3e-84 317.0 182 84.1
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.1e-84 316.2 183 83.6
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.1e-84 316.2 183 83.6
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 2.1e-84 316.2 184 84.2
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 6.2e-84 314.7 182 83.5
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 6.2e-84 314.7 182 83.0
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.4e-83 313.5 180 83.9
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 1.8e-83 313.2 183 82.5
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 4.0e-83 312.0 182 83.5
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 6.9e-83 311.2 182 80.8
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 9.0e-83 310.8 182 82.4
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 2.0e-82 309.7 183 80.9
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.2e-81 306.2 182 81.3
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 3.8e-81 305.4 184 81.0
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 4.9e-81 305.1 182 81.9
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 8.4e-81 304.3 185 81.6
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.1e-80 303.9 182 81.3
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 1.1e-80 303.9 183 79.8
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 4.2e-80 302.0 182 80.2
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 5.4e-80 301.6 178 82.6
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 7.1e-80 301.2 182 79.7
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 1.6e-79 300.1 182 79.7
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 2.7e-79 299.3 177 80.2
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 3.5e-79 298.9 182 78.6
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 6.0e-79 298.1 182 79.1
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.0e-78 297.4 179 78.8
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 1.7e-78 296.6 183 79.8
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.3e-78 296.2 182 79.1
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.3e-78 296.2 182 79.1
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 5.1e-78 295.0 182 78.0
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 8.7e-78 294.3 178 80.3
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 8.7e-78 294.3 182 77.5
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.1e-77 293.9 182 78.0
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.1e-77 293.9 182 77.5
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 1.9e-77 293.1 178 78.7
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 1.9e-77 293.1 182 76.9
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.9e-77 293.1 182 76.4
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 1.9e-77 293.1 182 79.1
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 2.5e-77 292.7 182 78.6
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 2.5e-77 292.7 182 78.6
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 2.5e-77 292.7 179 77.7
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 3.3e-77 292.4 182 75.3
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 7.3e-77 291.2 182 75.8
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 7.3e-77 291.2 182 77.5
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 9.6e-77 290.8 182 75.3
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.6e-76 290.0 182 77.5
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 2.1e-76 289.7 182 76.9
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 4.8e-76 288.5 178 77.0
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 8.1e-76 287.7 182 75.3
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.4e-75 287.0 182 75.3
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 4.0e-75 285.4 182 75.8
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 4.0e-75 285.4 182 75.3
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 4.0e-75 285.4 179 76.0
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 4.0e-75 285.4 182 76.4
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.3e-75 285.0 182 75.8
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 5.3e-75 285.0 182 76.4
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 9.0e-75 284.3 177 77.4
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 9.0e-75 284.3 177 77.4
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 9.0e-75 284.3 182 76.4
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.2e-74 283.9 184 74.5
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.2e-74 283.9 184 74.5
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.5e-74 283.5 184 74.5
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 2.0e-74 283.1 182 73.1
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 2.0e-74 283.1 182 75.3
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.0e-74 283.1 182 73.6
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 2.0e-74 283.1 179 74.9
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.5e-74 282.0 182 73.1
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 4.5e-74 282.0 177 78.5
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 4.5e-74 282.0 182 73.6
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 1.7e-73 280.0 182 74.7
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 2.2e-73 279.6 178 74.7
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 4.9e-73 278.5 183 74.9
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 6.4e-73 278.1 183 71.6
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 1.1e-72 277.3 178 74.2
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.4e-72 276.9 182 74.2
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 3.2e-72 275.8 181 71.8
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 3.2e-72 275.8 179 72.6
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.6e-71 273.5 177 73.4
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.6e-71 273.5 182 72.0
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 6.0e-71 271.6 182 70.9
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 3.9e-70 268.9 182 69.8
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.1e-69 267.3 182 69.2
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 1.1e-69 267.3 182 69.2
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 1.1e-69 267.3 182 69.2
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 1.1e-69 267.3 182 69.2
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.1e-69 267.3 180 71.1
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.1e-69 267.3 182 70.3
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 1.1e-69 267.3 182 67.0
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 1.5e-69 266.9 182 69.2
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 1.5e-69 266.9 182 69.2
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.9e-69 266.5 182 70.3
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 3.3e-69 265.8 179 71.5
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 4.3e-69 265.4 183 69.4
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 5.6e-69 265.0 183 69.4
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 7.4e-69 264.6 182 68.1
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 7.4e-69 264.6 182 70.3
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.8e-68 262.7 179 71.5
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 8.1e-68 261.2 191 68.1
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 8.1e-68 261.2 183 68.3
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 1.4e-67 260.4 182 68.1
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.8e-67 260.0 182 67.6
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 3.1e-67 259.2 177 67.2
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 4.0e-67 258.8 185 68.1
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 5.3e-67 258.5 181 69.1
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 5.3e-67 258.5 183 67.8
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 2.6e-66 256.1 182 68.7
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 4.5e-66 255.4 180 70.0
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 1.0e-65 254.2 180 67.8
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 1.3e-65 253.8 170 72.4
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 6.5e-65 251.5 183 67.2
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.5e-64 249.6 183 68.3
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.0e-62 244.2 182 64.8
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.0e-62 244.2 192 63.5
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 1.3e-62 243.8 177 67.2
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 1.8e-62 243.4 178 66.3
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 3.0e-62 242.7 177 67.8
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.3e-57 227.3 179 64.2
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 1.7e-57 226.9 186 58.6
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 2.5e-56 223.0 176 62.5
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 4.3e-53 212.2 179 59.2
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 2.4e-51 206.5 182 58.2
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 2.6e-50 203.0 163 65.0
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.3e-45 186.0 118 72.0
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 1.1e-43 181.0 184 52.7
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.7e-39 165.6 118 66.1
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 6.1e-39 165.2 197 47.2
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 1.4e-38 164.1 160 53.1
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 1.8e-35 153.7 179 39.1
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 8.8e-30 134.8 112 61.6
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 9.1e-27 124.8 75 80.0
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.6e-23 114.0 99 58.6
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 4.4e-21 105.9 164 34.8
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 6.3e-12 75.5 55 69.1
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 2.7e-10 70.1 69 50.7
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 4.5e-10 69.3 65 52.3
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 8.0e-07 58.5 41 65.9


User provided reference genes

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