Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 6.8e-162 573.9 292 100.0
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 7.6e-161 570.5 292 99.3
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 6.6e-157 557.4 292 97.3
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 4.3e-156 554.7 292 95.5
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 2.8e-155 552.0 292 94.9
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 1.5e-153 546.2 292 93.5
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 3.8e-152 541.6 292 94.2
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.3e-144 516.5 292 89.7
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 4.9e-144 514.6 292 89.4
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 8.4e-144 513.8 292 89.4
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 4.2e-143 511.5 292 86.3
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 5.6e-140 501.1 291 84.9
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 5.6e-140 501.1 291 84.9
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 9.6e-140 500.4 290 84.5
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 2.8e-139 498.8 291 84.5
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 2.8e-139 498.8 302 82.1
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 2.8e-139 498.8 288 85.8
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 6.2e-139 497.7 291 84.5
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 2.4e-138 495.7 289 84.4
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 2.4e-138 495.7 287 85.0
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 3.1e-138 495.4 290 84.1
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 6.9e-138 494.2 293 83.6
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 1.2e-137 493.4 291 83.8
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 1.5e-137 493.0 290 82.4
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 1.5e-137 493.0 287 84.3
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 2.0e-137 492.7 289 84.1
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 1.3e-136 490.0 290 81.7
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.3e-136 490.0 287 84.3
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 2.2e-136 489.2 284 83.8
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 3.8e-136 488.4 285 83.5
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 3.8e-136 488.4 326 76.7
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 4.9e-136 488.0 291 83.2
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 1.1e-135 486.9 290 81.4
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 1.1e-135 486.9 290 82.8
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 7.1e-135 484.2 291 82.1
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 7.1e-135 484.2 293 82.9
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 7.1e-135 484.2 289 82.4
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.2e-134 483.4 291 82.8
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 1.6e-134 483.0 287 82.9
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 1.6e-134 483.0 287 83.6
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.1e-134 482.6 293 82.6
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 2.7e-134 482.3 291 80.8
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 3.5e-134 481.9 290 83.4
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 6.0e-134 481.1 291 80.4
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.0e-133 480.3 289 81.7
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 1.0e-133 480.3 289 82.0
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 3.0e-133 478.8 291 80.1
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 3.0e-133 478.8 289 80.6
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 3.0e-133 478.8 287 81.9
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 3.0e-133 478.8 289 82.0
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 5.1e-133 478.0 293 80.9
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 5.1e-133 478.0 285 82.1
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 8.7e-133 477.2 291 81.8
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 8.7e-133 477.2 287 82.2
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 8.7e-133 477.2 290 80.3
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 1.1e-132 476.9 290 79.3
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 5.7e-132 474.6 289 80.6
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 5.7e-132 474.6 289 80.6
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 5.7e-132 474.6 289 80.6
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 5.7e-132 474.6 289 80.6
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 7.4e-132 474.2 290 82.1
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 7.4e-132 474.2 291 80.1
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 9.6e-132 473.8 289 81.0
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 9.6e-132 473.8 290 80.0
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 9.6e-132 473.8 289 81.7
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 1.3e-131 473.4 289 80.3
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 1.3e-131 473.4 289 80.3
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 4.8e-131 471.5 301 79.7
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 8.2e-131 470.7 289 79.2
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 4.1e-130 468.4 289 80.3
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 4.1e-130 468.4 291 79.4
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 5.3e-130 468.0 289 79.9
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 5.3e-130 468.0 293 79.9
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 9.0e-130 467.2 290 79.3
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 9.0e-130 467.2 291 80.4
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.5e-129 466.5 287 80.8
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 2.0e-129 466.1 290 79.7
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 2.6e-129 465.7 289 79.2
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 2.6e-129 465.7 289 79.2
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 2.6e-129 465.7 289 79.2
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 2.6e-129 465.7 287 80.5
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 5.9e-129 464.5 289 80.3
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 7.6e-129 464.2 290 77.9
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 1.0e-128 463.8 287 79.4
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 1.0e-128 463.8 289 79.2
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 1.0e-128 463.8 289 78.9
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 2.2e-128 462.6 290 78.3
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 2.9e-128 462.2 287 80.5
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 3.8e-128 461.8 289 79.9
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 3.8e-128 461.8 290 80.3
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 6.5e-128 461.1 289 78.9
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 6.5e-128 461.1 289 79.2
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.1e-127 460.3 303 77.6
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 1.9e-127 459.5 284 79.2
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 2.5e-127 459.1 292 78.4
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 3.2e-127 458.8 289 78.9
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 5.5e-127 458.0 290 78.3
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 5.5e-127 458.0 289 78.9
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 1.2e-126 456.8 289 78.5
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 1.6e-126 456.4 289 78.5
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.6e-126 456.4 291 79.4
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 3.6e-126 455.3 289 78.2
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 7.9e-126 454.1 291 75.9
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 7.9e-126 454.1 289 77.2
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 3.0e-125 452.2 284 77.8
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 3.9e-125 451.8 290 76.2
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 5.1e-125 451.4 287 76.7
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 5.1e-125 451.4 284 77.8
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 6.7e-125 451.1 287 77.0
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 2.5e-124 449.1 290 76.6
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 1.3e-123 446.8 302 75.8
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.6e-123 446.4 261 85.1
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 4.8e-123 444.9 304 75.3
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 8.2e-123 444.1 287 75.6
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 1.1e-122 443.7 274 79.6
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.1e-122 443.7 293 77.1
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 1.8e-122 443.0 307 73.9
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 3.1e-122 442.2 293 77.1
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 4.1e-122 441.8 292 78.1
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 5.3e-122 441.4 294 74.5
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 2.6e-121 439.1 448 55.6
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 5.9e-121 438.0 289 76.1
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 5.0e-120 434.9 287 73.9
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 1.9e-119 433.0 290 75.2
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 3.6e-118 428.7 289 73.7
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 3.9e-117 425.2 291 73.5
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 5.1e-117 424.9 291 73.2
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 8.8e-117 424.1 291 73.2
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 1.1e-116 423.7 292 72.9
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 1.5e-116 423.3 284 74.6
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 4.3e-116 421.8 288 73.3
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 1.2e-113 413.7 232 87.1
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 2.6e-113 412.5 309 70.2
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 3.8e-112 408.7 234 85.0
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 3.2e-111 405.6 253 78.3
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 1.1e-108 397.1 293 68.9
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 2.0e-108 396.4 257 75.9
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 5.7e-108 394.8 290 66.2
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.3e-107 393.7 290 65.9
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.7e-107 393.3 290 66.2
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 2.4e-106 389.4 294 67.7
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 4.5e-105 385.2 284 64.4
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 1.1e-100 370.5 298 66.4
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 2.2e-99 366.3 232 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 4.0e-93 345.5 291 59.5
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.9e-88 329.3 203 80.8
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 4.1e-82 308.9 285 55.4
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 2.3e-77 293.1 270 59.6
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 6.4e-75 285.0 291 51.5
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 1.0e-72 277.7 287 50.2
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 2.5e-71 273.1 284 48.6
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 1.6e-70 270.4 281 49.5
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.0e-68 263.5 164 77.4
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 2.3e-56 223.4 154 70.1
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 1.2e-54 217.6 113 92.0
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 6.2e-54 215.3 151 72.8
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 7.8e-49 198.4 139 73.4
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 1.1e-23 114.8 82 72.0
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 1.6e-22 110.9 75 74.7
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 2.8e-22 110.2 124 47.6
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 3.7e-22 109.8 100 59.0
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 6.2e-22 109.0 161 40.4
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 4.0e-21 106.3 101 57.4
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 2.6e-20 103.6 65 78.5
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.3e-19 101.3 100 56.0
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 4.9e-19 99.4 66 71.2
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 6.5e-19 99.0 57 84.2
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 9.3e-18 95.1 150 41.3
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 1.8e-16 90.9 70 64.3
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 4.1e-13 79.7 58 63.8
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 4.1e-13 79.7 58 63.8
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 3.6e-09 66.6 55 60.0
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 1.1e-07 61.6 38 78.9
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 1.5e-07 61.2 41 65.9
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 1.9e-07 60.8 65 55.4


User provided reference genes

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