Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 3903.6 1986 100.0
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 3851.6 1986 98.7
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 3376.6 1986 86.3
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 3069.3 1994 78.9
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 2904.0 1957 76.9
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 2148.2 1393 78.7
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1867.0 2043 50.4
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1849.3 2043 49.9
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1692.9 2018 47.3
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1639.0 2004 45.7
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1610.9 2142 44.5
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 1610.9 2059 44.9
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1557.7 2001 44.0
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1552.7 2005 45.2
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1549.6 2166 42.8
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1540.0 2056 42.8
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1535.4 2007 43.6
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 1526.1 2040 44.2
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 1505.0 2040 43.6
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 1501.5 2021 43.9
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1496.1 2096 43.6
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1493.0 2070 43.0
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1476.5 2034 42.9
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1476.1 2023 43.9
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1463.4 2028 42.7
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1455.7 2042 42.0
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1438.7 2040 42.8
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1400.6 2044 41.4
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1397.1 2045 42.2
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1380.2 2084 40.8
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1379.0 2047 40.6
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1374.0 2027 42.2
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1372.8 2033 41.1
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1369.8 2044 40.1
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1364.7 2042 40.7
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1329.7 1992 39.9
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1325.8 2024 38.9
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1319.3 1801 42.5
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1310.4 2033 39.7
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1305.4 2036 39.5
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1299.3 1998 40.7
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1289.2 2002 40.1
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1285.0 1767 42.4
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1274.6 1962 41.0
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1256.5 2087 37.5
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1246.9 2056 37.6
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1238.0 2033 38.0
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1229.5 2040 37.4
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1226.5 2033 37.7
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1226.5 2003 38.9
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1222.2 2030 37.7
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1221.8 2084 38.1
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1217.6 2071 37.5
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1215.7 2016 37.2
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1214.9 2043 37.0
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1214.5 2045 37.8
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1212.2 2042 37.9
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1212.2 2020 37.3
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1211.4 2024 38.1
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1210.7 2016 38.0
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1208.7 2003 38.7
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1207.2 1720 42.0
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1203.3 2008 38.1
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1203.0 2041 37.5
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1189.1 2047 37.9
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1185.2 2042 38.1
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1177.2 2054 37.1
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1174.8 2009 37.2
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1172.9 1790 41.9
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1166.0 1749 41.2
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1162.9 2053 37.9
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1154.4 2039 36.7
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1149.8 2015 36.7
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1135.2 2022 36.8
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1115.9 2028 37.0
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1112.1 2082 36.6
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1093.2 1809 39.2
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1089.3 2011 36.5
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 4.3e-308 1062.4 2040 36.4
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 9.6e-308 1061.2 2063 35.8
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 3.8e-304 1049.3 2069 35.6
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.9e-303 1047.0 1804 38.5
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 4.2e-303 1045.8 2022 35.7
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 9.3e-303 1044.6 1962 35.5
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 5.7e-300 1035.4 2105 35.0
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 7.4e-300 1035.0 2102 35.1
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 3.1e-298 1029.6 2021 34.9
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 2.9e-296 1023.1 2001 34.2
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 3.4e-289 999.6 2010 34.7
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 2.9e-288 996.5 2041 33.2
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 3.7e-283 979.5 1466 40.2
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 5.0e-264 916.0 912 54.9
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 2.5e-263 913.7 1684 34.1
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 1.5e-260 904.4 1831 35.3
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 1.1e-258 898.3 1561 36.5
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 8.9e-213 745.7 1216 38.6
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 8.9e-213 745.7 1548 33.3
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 4.2e-202 710.3 819 48.2
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 4.6e-185 653.7 1150 37.6
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 1.3e-174 619.0 1900 28.4
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 3.5e-156 557.8 2174 26.9
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.2e-150 538.5 1245 33.4
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.8e-149 535.4 1117 34.9
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 9.1e-149 533.1 1145 35.4
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.1e-133 483.0 898 35.1
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 4.4e-127 461.1 390 59.7
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 1.6e-124 452.6 2151 23.8
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.3e-123 449.5 555 46.8
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 4.3e-122 444.5 789 37.1
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 9.2e-117 426.8 537 45.1
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 1.9e-114 419.1 2106 24.7
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 3.0e-99 368.6 1945 24.8
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.0e-95 355.9 485 42.1
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.3e-83 315.8 863 31.5
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 7.2e-53 214.5 177 59.3
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 3.0e-51 209.1 201 52.7
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 1.3e-49 203.8 429 33.1
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 2.8e-49 202.6 347 36.9
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 1.2e-44 187.2 343 33.5
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 3.5e-39 169.1 234 44.0
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 6.5e-38 164.9 500 30.2
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.2e-37 162.2 325 34.8
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 8.0e-36 157.9 245 40.8
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 9.1e-32 144.4 232 40.5
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 5.0e-30 138.7 269 34.2
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 6.5e-30 138.3 349 32.1
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 1.6e-28 133.7 140 47.1
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.6e-28 132.5 206 37.9
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.4e-27 130.6 206 40.3
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 4.0e-27 129.0 72 86.1
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 6.8e-27 128.3 210 35.7
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 2.0e-26 126.7 247 36.4
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 2.0e-26 126.7 121 53.7
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 3.7e-25 122.5 149 43.6
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 3.8e-22 112.5 125 48.0
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 3.0e-19 102.8 79 60.8
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 3.4e-18 99.4 167 35.9
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 4.4e-18 99.0 390 23.3
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.1e-16 94.4 76 59.2
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.2e-15 90.9 244 30.7
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 7.8e-15 88.2 148 39.2
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 3.8e-14 85.9 334 24.0
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 3.8e-14 85.9 334 24.0
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 5.6e-13 82.0 64 57.8
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 9.5e-13 81.3 332 26.2
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 6.1e-12 78.6 94 41.5
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.8e-11 77.0 409 23.0
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 6.8e-11 75.1 67 50.7
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 1.5e-10 73.9 153 29.4
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.8e-08 67.0 74 47.3
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 1.8e-08 67.0 104 38.5
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 4.1e-08 65.9 119 33.6
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.0e-08 65.1 225 24.4
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 5.0e-06 58.9 281 21.0


User provided reference genes

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