Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 0.0e+00 1156.0 603 100.0
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 0.0e+00 1148.7 603 99.0
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 0.0e+00 1115.9 603 95.5
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 0.0e+00 1111.3 603 95.2
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 0.0e+00 1097.0 604 94.4
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 0.0e+00 1095.1 603 94.4
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 3.0e-305 1051.2 606 90.6
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.6e-282 975.7 603 82.1
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 8.9e-281 969.9 601 83.2
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 3.4e-280 968.0 599 82.5
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 3.7e-279 964.5 601 82.5
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 3.7e-279 964.5 601 82.4
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 5.4e-278 960.7 601 81.4
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 7.0e-278 960.3 601 81.7
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 9.2e-278 959.9 601 81.9
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.2e-277 959.5 601 81.4
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 2.3e-276 955.3 657 76.9
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 3.8e-276 954.5 601 82.0
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 4.7e-274 947.6 601 80.9
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 6.1e-274 947.2 601 80.5
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 4.0e-273 944.5 601 79.2
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 5.2e-273 944.1 620 79.2
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 9.8e-272 939.9 496 98.2
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 1.9e-270 935.6 601 79.9
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.9e-270 935.6 603 79.4
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 9.2e-270 933.3 601 79.5
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.0e-269 932.2 609 79.0
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.7e-269 931.8 601 79.9
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 3.5e-269 931.4 617 78.0
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 1.3e-268 929.5 589 81.0
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.7e-268 929.1 604 79.3
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 2.5e-267 925.2 592 79.6
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 9.5e-267 923.3 625 76.8
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.2e-266 922.9 601 78.7
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 2.1e-266 922.2 601 78.7
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 2.8e-266 921.8 592 80.1
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 3.1e-265 918.3 608 78.5
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 4.0e-265 917.9 593 79.3
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.5e-264 916.0 601 79.0
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 5.8e-264 914.1 604 78.5
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 3.7e-263 911.4 601 78.4
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 1.9e-262 909.1 596 77.3
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 4.1e-262 907.9 560 83.0
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 7.0e-262 907.1 599 77.1
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 7.0e-262 907.1 600 77.7
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 9.2e-262 906.7 603 77.3
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 6.6e-260 900.6 601 76.7
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.5e-259 899.4 649 73.2
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 2.8e-258 895.2 595 78.3
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 4.7e-258 894.4 602 76.7
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.1e-257 893.3 567 80.1
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 1.1e-257 893.3 595 76.8
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.1e-257 893.3 606 75.7
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 4.0e-257 891.3 595 77.1
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 6.8e-257 890.6 601 76.4
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.5e-256 889.4 606 75.6
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 2.0e-256 889.0 606 75.7
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 2.6e-256 888.6 621 75.2
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 5.8e-256 887.5 603 75.6
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 9.9e-256 886.7 599 75.6
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.7e-255 885.9 606 75.2
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 2.2e-255 885.6 602 75.7
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.2e-255 885.6 595 76.5
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 2.9e-255 885.2 601 75.7
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 2.9e-255 885.2 595 77.0
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 3.7e-255 884.8 599 75.8
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 4.9e-255 884.4 606 75.1
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 4.9e-255 884.4 606 75.4
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 6.4e-255 884.0 601 75.5
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 6.4e-255 884.0 601 75.5
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 6.4e-255 884.0 601 75.5
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 6.4e-255 884.0 601 75.5
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 8.3e-255 883.6 601 75.4
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 1.9e-254 882.5 606 74.9
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.9e-254 882.5 592 76.0
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 3.2e-254 881.7 606 74.8
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 4.1e-254 881.3 602 76.1
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 5.4e-254 880.9 595 76.1
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 9.2e-254 880.2 599 75.3
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.6e-253 879.4 544 81.8
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 2.7e-253 878.6 601 75.0
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 3.5e-253 878.2 597 75.5
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.0e-252 876.7 603 74.5
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 5.1e-252 874.4 598 74.7
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.5e-251 872.1 617 74.9
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.5e-251 872.1 606 75.7
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 5.6e-251 870.9 599 75.8
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.6e-250 869.4 606 75.6
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 2.1e-250 869.0 682 69.4
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 3.6e-250 868.2 601 74.4
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 8.1e-250 867.1 597 74.7
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 8.1e-250 867.1 642 72.9
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 4.0e-249 864.8 614 74.8
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 2.0e-248 862.4 550 79.8
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 2.6e-248 862.1 600 74.0
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 8.4e-247 857.1 598 74.1
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 5.4e-246 854.4 597 73.9
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 2.1e-245 852.4 603 73.3
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 6.0e-245 850.9 603 73.1
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 2.3e-244 849.0 601 72.4
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.9e-243 845.9 597 73.9
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.6e-242 842.8 625 70.9
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 1.1e-241 840.1 585 74.9
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 4.9e-239 831.2 564 75.7
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-238 830.1 602 74.1
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 5.6e-235 817.8 564 76.6
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 9.3e-230 800.4 655 63.7
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.1e-229 799.3 594 71.4
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.7e-229 798.9 594 71.5
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 2.4e-225 785.8 603 68.8
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 7.6e-224 780.8 502 78.5
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 5.1e-212 741.5 478 80.1
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 9.7e-211 737.3 598 63.7
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 4.1e-209 731.9 604 64.6
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 7.7e-208 727.6 603 62.0
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.7e-207 726.5 478 77.4
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 9.7e-195 684.1 440 80.5
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.5e-190 669.5 552 66.7
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.5e-187 660.2 428 77.6
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.8e-185 653.3 502 68.3
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.8e-170 602.8 605 53.1
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 3.4e-163 579.3 582 52.7
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 3.4e-163 579.3 576 53.8
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.0e-160 570.1 316 94.6
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 8.3e-154 548.1 439 63.8
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.4e-145 520.8 288 92.7
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 2.7e-144 516.5 366 74.3
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 4.7e-141 505.8 336 75.9
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 3.9e-135 486.1 610 46.2
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 1.5e-134 484.2 418 61.0
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.5e-126 457.6 577 44.9
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 6.2e-125 452.2 535 52.3
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 3.6e-117 426.4 281 80.1
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 6.5e-106 389.0 249 76.7
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 2.1e-104 384.0 437 50.1
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 6.7e-95 352.4 316 63.0
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.4e-92 344.0 273 67.8
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 5.2e-71 273.1 675 31.7
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 4.5e-67 260.0 553 34.2
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 7.2e-65 252.7 182 73.6
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 1.5e-62 245.0 154 79.9
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 8.3e-61 239.2 156 77.6
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 8.0e-56 222.6 154 73.4
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.2e-45 188.0 102 91.2
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.3e-45 186.0 107 86.9
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.2e-40 172.2 96 90.6
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 1.7e-34 151.8 629 26.6
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.8e-31 141.7 120 56.7
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 4.0e-31 140.6 97 72.2
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 4.9e-29 133.7 186 43.5
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.0e-26 125.9 69 84.1
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.7e-26 125.2 97 59.8
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 8.6e-26 122.9 66 90.9
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 8.9e-23 112.8 72 72.2
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 5.8e-22 110.2 61 93.4
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 1.7e-18 98.6 636 24.4
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 4.3e-17 94.0 78 55.1
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 4.7e-16 90.5 199 34.7
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 4.0e-15 87.4 49 85.7
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 2.0e-14 85.1 48 85.4
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.7e-13 82.0 95 55.8
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 1.7e-13 82.0 54 74.1
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 3.2e-12 77.8 71 49.3
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.8e-07 62.0 54 63.0
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 2.4e-07 61.6 54 63.0


User provided reference genes

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