Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 2.4e-162 575.5 292 100.0
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 8.9e-162 573.5 292 99.7
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 2.9e-160 568.5 292 98.6
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 8.1e-147 523.9 292 91.4
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 3.1e-146 521.9 292 90.4
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 6.9e-146 520.8 292 90.1
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 4.5e-145 518.1 292 89.7
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 7.6e-145 517.3 292 89.7
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.3e-144 516.5 292 89.4
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 8.4e-144 513.8 292 88.7
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 5.1e-141 504.6 292 86.3
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 2.1e-139 499.2 288 87.2
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 2.1e-139 499.2 288 87.2
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 3.7e-139 498.4 290 85.9
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 5.3e-138 494.6 287 85.4
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 1.2e-137 493.4 291 84.5
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 3.4e-137 491.9 287 85.4
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 7.6e-137 490.7 287 86.8
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 1.0e-136 490.3 291 84.9
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 1.3e-136 490.0 291 83.8
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 2.9e-136 488.8 290 83.8
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 3.8e-136 488.4 299 82.6
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 6.5e-136 487.6 287 85.7
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 2.5e-135 485.7 287 84.0
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 2.5e-135 485.7 287 83.6
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 3.2e-135 485.3 284 84.5
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 3.2e-135 485.3 289 84.4
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 3.2e-135 485.3 287 83.6
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 9.3e-135 483.8 290 82.8
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 1.6e-134 483.0 290 82.8
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 2.7e-134 482.3 326 76.7
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 2.7e-134 482.3 290 82.8
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.6e-134 481.5 287 84.0
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 6.0e-134 481.1 287 83.6
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 7.9e-134 480.7 287 83.3
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 7.9e-134 480.7 290 82.1
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 1.0e-133 480.3 287 82.6
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 1.8e-133 479.6 287 83.3
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 2.3e-133 479.2 287 85.0
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 3.0e-133 478.8 287 82.6
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 3.9e-133 478.4 290 81.7
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 3.9e-133 478.4 290 82.1
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 5.1e-133 478.0 291 82.1
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 1.5e-132 476.5 290 81.7
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 1.5e-132 476.5 287 81.5
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 2.5e-132 475.7 287 82.6
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 3.3e-132 475.3 293 81.9
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 4.3e-132 474.9 291 80.8
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 7.4e-132 474.2 291 82.1
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 2.1e-131 472.6 288 81.9
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 2.8e-131 472.2 285 81.8
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.1e-130 470.3 290 81.4
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.4e-130 469.9 290 80.7
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 1.8e-130 469.5 290 82.4
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.4e-130 469.2 287 80.8
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 2.4e-130 469.2 291 80.8
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.1e-130 468.8 291 81.1
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.1e-130 468.8 290 81.0
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 6.9e-130 467.6 287 80.1
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 9.0e-130 467.2 293 79.2
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 3.4e-129 465.3 288 80.2
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 3.4e-129 465.3 288 80.2
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 4.5e-129 464.9 293 78.8
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 4.5e-129 464.9 289 79.6
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 4.5e-129 464.9 293 78.8
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 7.6e-129 464.2 287 80.8
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.0e-128 463.8 287 80.5
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 1.0e-128 463.8 291 81.4
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 1.3e-128 463.4 288 79.9
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 1.7e-128 463.0 289 79.6
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.7e-128 463.0 287 79.1
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.7e-128 463.0 290 80.3
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 2.9e-128 462.2 289 77.9
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 2.9e-128 462.2 301 78.7
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 2.9e-128 462.2 290 79.0
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 2.9e-128 462.2 290 80.3
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 3.8e-128 461.8 289 78.9
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 3.8e-128 461.8 288 78.8
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 5.0e-128 461.5 288 80.2
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 6.5e-128 461.1 288 80.2
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 8.4e-128 460.7 291 80.4
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 1.1e-127 460.3 287 79.8
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.4e-127 459.9 287 80.8
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 1.4e-127 459.9 292 79.1
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 2.5e-127 459.1 294 79.3
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 3.2e-127 458.8 287 80.1
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 3.2e-127 458.8 290 77.2
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 4.2e-127 458.4 290 80.0
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 5.5e-127 458.0 290 77.6
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 5.5e-127 458.0 290 77.6
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 5.5e-127 458.0 290 77.6
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 9.3e-127 457.2 288 79.2
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 9.3e-127 457.2 294 78.9
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 1.2e-126 456.8 290 77.2
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 1.2e-126 456.8 290 77.2
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 2.1e-126 456.1 287 80.5
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 2.7e-126 455.7 288 80.2
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 6.1e-126 454.5 288 79.2
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 6.1e-126 454.5 294 78.2
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 7.9e-126 454.1 288 79.2
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 1.3e-125 453.4 288 78.1
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 1.8e-125 453.0 274 81.4
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 3.0e-125 452.2 287 78.7
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 2.5e-124 449.1 290 79.0
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 3.3e-124 448.7 287 77.7
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 3.3e-124 448.7 287 78.7
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 7.4e-124 447.6 303 76.2
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 9.7e-124 447.2 302 76.8
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 1.3e-123 446.8 287 76.7
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 1.6e-123 446.4 284 77.8
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 1.6e-123 446.4 284 78.5
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.8e-122 443.0 290 78.3
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 4.1e-122 441.8 287 77.0
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 9.0e-122 440.7 284 77.1
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 1.5e-121 439.9 304 75.7
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 2.6e-121 439.1 287 76.0
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 7.7e-121 437.6 258 86.0
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 2.2e-120 436.0 290 76.2
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.9e-119 433.0 445 56.0
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 2.5e-119 432.6 308 71.8
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 3.2e-119 432.2 291 75.3
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 5.5e-119 431.4 291 75.3
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.1e-118 429.5 289 77.9
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 1.0e-117 427.2 289 75.4
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 3.0e-117 425.6 290 73.4
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 5.1e-117 424.9 287 73.9
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 1.3e-115 420.2 310 72.3
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 2.8e-115 419.1 292 72.6
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 3.7e-115 418.7 292 72.3
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 6.3e-115 417.9 292 72.3
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 1.8e-114 416.4 289 72.3
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 2.0e-113 412.9 284 73.9
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 3.4e-113 412.1 229 89.5
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 1.0e-109 400.6 253 79.1
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 2.3e-109 399.4 234 83.8
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 8.8e-109 397.5 294 68.7
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.3e-107 393.7 289 67.1
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 8.2e-107 391.0 257 76.3
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.8e-106 389.8 289 66.8
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.8e-106 389.8 289 66.4
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 7.7e-105 384.4 295 66.8
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 2.9e-104 382.5 286 64.7
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 3.7e-99 365.5 295 67.1
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 2.4e-98 362.8 229 79.0
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 1.4e-93 347.1 291 60.5
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 5.2e-85 318.5 204 78.9
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 1.4e-82 310.5 285 56.1
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.2e-76 290.8 270 60.0
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 4.9e-75 285.4 291 51.9
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 3.0e-72 276.2 287 50.2
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 7.3e-71 271.6 284 48.6
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 7.5e-68 261.5 281 48.0
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 4.9e-67 258.8 161 78.3
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 9.5e-55 218.0 154 68.2
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 1.5e-52 210.7 151 72.2
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 5.8e-52 208.8 113 90.3
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 9.2e-50 201.4 139 75.5
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 1.3e-24 117.9 82 74.4
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 7.4e-23 112.1 97 63.9
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 9.6e-23 111.7 101 62.4
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 2.8e-22 110.2 124 48.4
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 1.4e-21 107.8 163 40.5
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 1.2e-20 104.8 75 69.3
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.5e-20 104.4 97 60.8
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 7.6e-20 102.1 67 73.1
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 4.9e-19 99.4 63 79.4
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 2.7e-17 93.6 94 56.4
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 1.3e-16 91.3 56 78.6
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 1.6e-14 84.3 70 60.0
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 1.0e-11 75.1 58 60.3
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 1.0e-11 75.1 58 60.3
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 7.2e-10 68.9 52 67.3
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 5.1e-08 62.8 41 68.3
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 1.5e-07 61.2 73 53.4
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 1.3e-06 58.2 32 84.4


User provided reference genes

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