Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 2.9e-108 395.2 197 100.0
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.9e-83 312.8 166 96.4
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 1.9e-83 312.8 166 96.4
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.9e-83 312.8 166 96.4
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 5.6e-83 311.2 166 96.4
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 3.6e-82 308.5 166 94.6
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 4.3e-75 285.0 166 87.3
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 2.8e-74 282.3 166 84.3
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 3.1e-73 278.9 162 87.7
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.3e-71 273.5 161 87.0
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 4.2e-70 268.5 161 85.1
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 2.4e-65 252.7 165 75.8
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 3.1e-65 252.3 165 76.4
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.5e-64 250.0 146 89.7
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.6e-61 240.0 165 73.3
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 2.7e-61 239.2 164 73.2
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 3.5e-61 238.8 165 73.3
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 7.8e-61 237.7 166 74.1
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.0e-60 237.3 165 72.7
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 3.0e-60 235.7 165 73.3
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.5e-59 233.4 165 70.9
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 1.9e-59 233.0 162 71.6
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 9.6e-59 230.7 165 70.9
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 2.1e-58 229.6 164 70.1
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 2.1e-58 229.6 164 69.5
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 2.1e-58 229.6 162 72.8
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 1.4e-57 226.9 164 69.5
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 6.9e-57 224.6 157 73.9
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 2.0e-56 223.0 165 67.9
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 2.6e-56 222.6 162 70.4
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 3.4e-56 222.2 165 67.3
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 3.4e-56 222.2 155 72.9
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 7.6e-56 221.1 167 65.3
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 7.6e-56 221.1 165 67.9
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 9.9e-56 220.7 165 67.9
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 9.9e-56 220.7 166 68.7
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 1.3e-55 220.3 154 73.4
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.3e-55 220.3 164 68.9
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.3e-55 220.3 164 68.9
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 2.2e-55 219.5 165 69.7
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 4.9e-55 218.4 155 72.3
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 6.4e-55 218.0 166 66.3
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 8.4e-55 217.6 165 66.7
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 8.4e-55 217.6 157 70.7
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 1.1e-54 217.2 165 65.5
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 1.9e-54 216.5 163 66.3
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 1.9e-54 216.5 165 63.0
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 1.9e-54 216.5 165 63.0
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 1.9e-54 216.5 161 67.7
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 2.4e-54 216.1 167 63.5
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 4.2e-54 215.3 165 63.0
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 1.2e-53 213.8 165 64.2
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 1.2e-53 213.8 165 66.7
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 2.1e-53 213.0 155 71.0
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 2.7e-53 212.6 165 63.6
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 3.5e-53 212.2 165 64.8
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 3.5e-53 212.2 163 64.4
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 7.9e-53 211.1 162 63.0
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 7.9e-53 211.1 162 63.0
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 1.0e-52 210.7 162 67.9
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 1.3e-52 210.3 167 66.5
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 1.3e-52 210.3 165 65.5
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 1.3e-52 210.3 164 68.3
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 1.3e-52 210.3 194 59.3
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 1.8e-52 209.9 162 62.3
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 1.8e-52 209.9 162 62.3
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 3.9e-52 208.8 165 62.4
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 5.1e-52 208.4 165 62.4
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 6.7e-52 208.0 165 62.4
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 6.7e-52 208.0 163 63.8
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 6.7e-52 208.0 165 64.8
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 1.1e-51 207.2 160 66.2
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 1.9e-51 206.5 163 65.0
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 1.9e-51 206.5 160 66.2
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 3.3e-51 205.7 165 64.2
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 4.3e-51 205.3 163 63.2
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 2.1e-50 203.0 167 64.1
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 3.7e-50 202.2 166 62.7
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.8e-50 201.8 161 62.7
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 4.8e-50 201.8 166 60.2
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 6.2e-50 201.4 164 61.0
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 8.1e-50 201.1 161 62.7
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.1e-49 200.7 161 62.7
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.1e-49 200.7 161 62.7
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 2.4e-49 199.5 161 65.2
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 3.1e-49 199.1 164 61.6
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 3.1e-49 199.1 164 60.4
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 6.9e-49 198.0 165 63.0
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 6.9e-49 198.0 159 63.5
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 3.4e-48 195.7 139 72.7
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 5.8e-48 194.9 167 61.7
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 7.6e-48 194.5 165 61.2
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 1.0e-47 194.1 166 56.6
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 4.9e-47 191.8 207 53.6
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 4.9e-47 191.8 165 62.4
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 4.9e-47 191.8 164 61.6
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 6.5e-47 191.4 162 63.0
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 1.4e-46 190.3 156 62.8
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 3.2e-46 189.1 162 61.7
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 4.2e-46 188.7 165 62.4
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 4.2e-46 188.7 166 55.4
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 1.0e-44 184.1 163 56.4
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 1.3e-44 183.7 165 58.8
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 6.7e-44 181.4 159 57.9
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 1.1e-43 180.6 159 57.9
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 4.3e-43 178.7 110 80.0
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 2.8e-42 176.0 114 75.4
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 3.7e-42 175.6 177 54.8
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 6.2e-42 174.9 110 77.3
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 1.8e-41 173.3 163 56.4
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 4.5e-40 168.7 192 49.5
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 1.0e-39 167.5 146 59.6
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 5.0e-39 165.2 191 46.6
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 1.6e-37 160.2 163 52.8
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 6.1e-37 158.3 170 51.8
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 1.3e-36 157.1 166 51.8
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 2.3e-36 156.4 110 68.2
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 8.7e-36 154.5 96 79.2
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 4.3e-35 152.1 110 67.3
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 1.8e-33 146.7 134 56.0
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 3.8e-31 139.0 186 46.2
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 7.2e-30 134.8 112 59.8
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.2e-29 134.0 90 71.1
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 6.9e-25 118.2 150 48.0
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 2.9e-23 112.8 107 51.4
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 2.2e-18 96.7 133 45.1
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 4.5e-16 89.0 168 36.9
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 2.2e-15 86.7 55 69.1
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 5.0e-15 85.5 120 37.5
Cc02_g24380 Coffea canephora HOM05D005088 ORTHO05D006914 1.8e-12 77.0 56 67.9
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 2.8e-10 69.7 37 81.1
SMO235G0038 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 3.1e-09 66.2 93 41.9
Sopen01g009540 Solanum pennellii HOM05D000030 ORTHO05D000009 9.1e-09 64.7 49 63.3
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 1.2e-08 64.3 37 75.7
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 4.5e-08 62.4 159 31.4
C04p35970 Brassica napus HOM05D005088 ORTHO05D017652 4.5e-08 62.4 159 31.4
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 4.5e-08 62.4 159 31.4
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 5.9e-08 62.0 43 65.1
C09p52510 Brassica napus HOM05D005088 ORTHO05D017652 9.4e-06 54.7 62 43.5
BolC9t58117H Brassica oleracea HOM05D005088 ORTHO05D017652 9.4e-06 54.7 62 43.5


User provided reference genes

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