Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 7.5e-164 580.5 300 100.0
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 2.0e-161 572.4 300 98.3
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 3.9e-152 541.6 297 92.6
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 6.2e-150 534.3 301 91.0
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 1.5e-127 459.9 234 99.6
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 2.6e-124 449.1 303 77.2
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 2.2e-123 446.0 340 70.9
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 3.5e-121 438.7 300 76.3
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 1.5e-119 433.3 299 74.6
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 5.6e-119 431.4 299 74.2
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 7.4e-119 431.0 306 74.5
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 3.7e-118 428.7 302 75.2
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 4.8e-118 428.3 298 75.8
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 6.2e-118 427.9 296 75.0
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 6.2e-118 427.9 298 73.8
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 8.1e-118 427.6 297 74.7
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.8e-117 426.4 246 90.7
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 6.9e-117 424.5 300 73.3
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 6.9e-117 424.5 299 72.9
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 2.6e-116 422.5 300 73.7
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 3.4e-116 422.2 301 75.7
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 4.5e-116 421.8 300 74.0
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 5.8e-116 421.4 302 74.2
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 1.0e-115 420.6 301 75.4
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.7e-115 419.9 303 75.6
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 2.9e-115 419.1 299 71.6
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 4.9e-115 418.3 319 69.9
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 4.9e-115 418.3 303 72.3
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 4.9e-115 418.3 303 75.2
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 6.5e-115 417.9 301 74.4
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 6.5e-115 417.9 298 72.8
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 1.4e-114 416.8 299 72.2
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 1.9e-114 416.4 319 69.6
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 1.9e-114 416.4 300 73.0
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 2.5e-114 416.0 300 75.3
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 2.5e-114 416.0 301 75.1
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 2.5e-114 416.0 300 72.7
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 3.2e-114 415.6 302 73.5
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.2e-113 413.7 300 73.3
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 2.1e-113 412.9 307 70.0
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 2.3e-112 409.5 300 70.3
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 3.0e-112 409.1 297 72.1
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.9e-112 408.7 300 70.3
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 5.1e-112 408.3 305 72.1
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 6.7e-112 407.9 306 72.5
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 6.7e-112 407.9 300 71.0
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 1.5e-111 406.8 301 72.4
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 1.5e-111 406.8 301 70.8
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 1.9e-111 406.4 299 71.9
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 1.9e-111 406.4 303 72.3
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 1.9e-111 406.4 308 71.8
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 2.5e-111 406.0 299 70.9
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 4.3e-111 405.2 293 70.6
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 4.3e-111 405.2 297 73.4
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 1.3e-110 403.7 303 71.6
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 2.8e-110 402.5 301 71.1
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 3.7e-110 402.1 336 67.9
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 6.3e-110 401.4 299 72.2
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 3.1e-109 399.1 301 70.8
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 5.3e-109 398.3 302 70.5
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 5.3e-109 398.3 306 70.3
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 6.9e-109 397.9 304 71.4
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 1.2e-108 397.1 299 70.6
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 1.0e-107 394.0 353 63.2
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 2.9e-107 392.5 320 66.6
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 3.8e-107 392.1 361 60.1
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 1.9e-106 389.8 298 72.5
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 7.2e-106 387.9 282 73.4
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 9.3e-106 387.5 301 70.1
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 9.3e-106 387.5 301 70.1
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 6.1e-105 384.8 269 74.3
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 1.3e-104 383.6 301 69.8
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 1.9e-103 379.8 318 66.7
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 3.3e-103 379.0 296 68.6
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 7.4e-103 377.9 368 57.3
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 8.2e-102 374.4 327 64.8
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 1.4e-101 373.6 282 70.2
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 4.1e-101 372.1 255 76.5
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 3.4e-100 369.0 277 73.3
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.1e-98 364.0 275 72.4
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 1.6e-97 360.1 323 62.2
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 6.1e-97 358.2 297 67.3
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 6.1e-97 358.2 312 65.4
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 7.9e-97 357.8 299 65.6
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 2.5e-95 352.8 300 66.0
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 2.5e-95 352.8 332 59.3
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 1.7e-94 350.1 255 72.5
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 8.2e-94 347.8 369 55.3
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 1.1e-93 347.4 253 71.1
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 3.1e-93 345.9 260 70.8
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 1.5e-92 343.6 260 70.0
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 1.3e-91 340.5 254 73.2
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 1.7e-91 340.1 252 71.8
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 3.6e-89 332.4 299 60.9
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 3.6e-89 332.4 252 70.2
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.4e-88 330.5 309 62.1
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 3.3e-87 325.9 205 78.0
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 5.7e-87 325.1 321 57.3
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 2.2e-86 323.2 280 64.3
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 4.1e-85 318.9 212 74.5
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 5.3e-85 318.5 259 67.6
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 1.2e-84 317.4 207 76.8
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.1e-82 310.8 252 68.3
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 1.5e-82 310.5 252 67.1
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 2.5e-82 309.7 247 71.7
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 4.7e-81 305.4 256 65.6
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 3.0e-80 302.8 325 54.2
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 3.3e-79 299.3 184 81.5
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 4.4e-79 298.9 301 59.1
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 4.8e-78 295.4 289 55.7
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 3.1e-77 292.7 224 69.6
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 4.5e-76 288.9 272 61.0
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 4.5e-76 288.9 242 66.1
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.3e-70 270.8 298 54.4
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 6.3e-70 268.5 290 54.1
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 7.0e-69 265.0 199 67.8
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.7e-68 263.1 226 61.5
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 8.5e-67 258.1 165 77.6
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 4.0e-64 249.2 351 45.9
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 3.4e-63 246.1 274 52.6
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 9.8e-63 244.6 202 64.9
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 1.4e-61 240.7 156 77.6
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 3.2e-53 213.0 154 72.1
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 3.3e-50 203.0 130 80.0
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 9.9e-31 138.3 119 63.9
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 2.4e-29 133.7 331 34.4
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 7.3e-26 122.1 301 30.6
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 4.6e-20 102.8 89 68.5
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 9.6e-18 95.1 329 28.9
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 9.9e-15 85.1 86 53.5
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 1.8e-11 74.3 71 59.2
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.1e-10 71.6 52 71.2
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 4.0e-08 63.2 52 59.6
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 4.5e-07 59.7 72 52.8


User provided reference genes

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