Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 3.4e-172 608.2 307 100.0
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 1.8e-168 595.9 304 98.0
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 1.1e-133 480.3 304 80.9
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.6e-129 466.5 304 79.3
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 5.2e-128 461.5 304 80.3
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 3.9e-99 365.5 230 81.7
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 4.8e-89 332.0 315 54.0
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 1.1e-85 320.9 304 56.2
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 3.5e-84 315.8 305 54.4
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 1.8e-83 313.5 303 52.8
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 1.5e-82 310.5 312 53.5
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 2.5e-82 309.7 309 52.8
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 4.3e-82 308.9 316 53.8
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 1.2e-79 300.8 332 50.0
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 5.8e-79 298.5 305 49.5
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 1.0e-78 297.7 299 50.5
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 1.7e-78 297.0 258 56.2
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 2.9e-78 296.2 311 51.8
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 5.5e-77 292.0 306 50.0
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 6.0e-76 288.5 308 47.4
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 6.0e-76 288.5 305 48.5
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 3.0e-75 286.2 297 50.2
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 1.1e-74 284.3 305 48.2
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 1.5e-74 283.9 308 47.4
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 2.5e-74 283.1 308 47.7
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 3.3e-74 282.7 308 46.8
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 4.3e-74 282.3 305 46.9
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 7.4e-74 281.6 295 48.1
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 1.3e-73 280.8 316 49.4
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 1.6e-73 280.4 306 48.4
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 3.7e-73 279.3 315 47.9
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 8.2e-73 278.1 308 46.4
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 1.1e-72 277.7 307 47.9
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 1.4e-72 277.3 305 46.9
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 6.9e-72 275.0 306 48.7
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 9.0e-72 274.6 313 46.3
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 9.0e-72 274.6 313 46.3
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 2.0e-71 273.5 297 47.8
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 3.4e-71 272.7 308 45.5
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 3.4e-71 272.7 309 47.2
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 1.3e-70 270.8 302 47.4
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 1.7e-70 270.4 300 46.3
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 3.8e-70 269.2 295 47.8
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 1.1e-69 267.7 326 45.1
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 1.9e-69 266.9 292 44.5
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 2.5e-69 266.5 291 47.1
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 1.2e-68 264.2 292 44.5
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 7.9e-68 261.5 295 47.8
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 2.3e-67 260.0 319 48.0
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 1.1e-66 257.7 318 46.2
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 1.9e-66 256.9 307 45.6
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 9.7e-66 254.6 284 48.9
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 1.6e-65 253.8 316 44.9
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 1.6e-65 253.8 313 46.6
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 4.8e-65 252.3 285 47.4
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 8.2e-65 251.5 304 47.4
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 1.8e-64 250.4 311 42.4
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.4e-64 250.0 301 47.2
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 1.5e-63 247.3 310 42.6
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.4e-63 246.1 209 55.0
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 5.9e-63 245.4 276 49.3
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 1.0e-62 244.6 315 42.2
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.3e-62 244.2 296 45.3
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 1.3e-62 244.2 317 42.9
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 2.2e-62 243.4 284 44.0
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 3.8e-62 242.7 298 45.3
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 4.2e-61 239.2 273 47.6
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 3.0e-59 233.0 298 42.3
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 7.4e-58 228.4 345 43.8
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 3.7e-57 226.1 320 43.4
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 1.1e-56 224.6 308 43.8
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 4.1e-56 222.6 416 34.9
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 4.1e-56 222.6 306 40.2
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 7.7e-55 218.4 291 43.3
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 1.7e-54 217.2 271 47.6
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 6.5e-54 215.3 293 39.9
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 1.4e-53 214.2 311 40.2
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 4.2e-53 212.6 247 48.6
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 4.7e-52 209.1 370 38.6
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 7.4e-50 201.8 302 41.7
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 2.2e-49 200.3 306 38.2
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 3.7e-49 199.5 311 38.3
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 4.8e-49 199.1 305 39.0
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.8e-48 197.2 341 37.2
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 5.9e-47 192.2 305 39.0
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 5.9e-47 192.2 306 37.9
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 1.7e-46 190.7 298 39.9
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 1.1e-45 188.0 298 39.6
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 2.5e-45 186.8 300 39.7
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.2e-45 186.0 246 44.3
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 7.2e-45 185.3 306 36.6
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 7.2e-45 185.3 300 39.0
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 3.0e-43 179.9 300 38.3
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 2.0e-42 177.2 303 37.0
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 6.3e-41 172.2 239 43.9
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 6.1e-36 155.6 213 40.8
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 3.4e-34 149.8 196 43.9
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 4.5e-31 139.4 299 35.5
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 2.9e-30 136.7 299 35.1
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 4.2e-29 132.9 302 34.8
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 3.1e-24 116.7 269 31.6
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 5.9e-23 112.5 299 30.4
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 2.1e-20 104.0 262 29.4
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-16 90.1 273 26.4
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 1.6e-15 87.8 157 36.3
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 7.8e-15 85.5 89 48.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.0e-11 75.1 186 30.6
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 3.2e-08 63.5 82 40.2
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 1.0e-06 58.5 91 35.2
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.0e-06 58.5 91 35.2


User provided reference genes

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