Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 3.3e-71 271.6 133 100.0
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 1.6e-70 269.2 133 99.2
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.1e-69 266.5 133 97.0
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.4e-69 266.2 133 97.7
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.4e-69 266.2 133 97.7
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 1.2e-68 263.1 133 97.0
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.3e-64 249.6 132 92.4
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 2.3e-64 248.8 133 91.7
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.9e-64 248.1 131 93.1
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.9e-64 248.1 131 93.1
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 5.1e-64 247.7 133 91.0
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 5.1e-64 247.7 133 90.2
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 5.1e-64 247.7 131 91.6
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 8.7e-64 246.9 132 90.9
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 1.1e-63 246.5 132 93.2
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 1.1e-63 246.5 131 90.8
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.1e-63 246.5 131 91.6
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 1.5e-63 246.1 133 89.5
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.9e-63 245.7 133 88.7
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 2.5e-63 245.4 133 90.2
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 3.3e-63 245.0 131 90.8
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 3.3e-63 245.0 129 91.5
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 4.3e-63 244.6 129 91.5
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 4.3e-63 244.6 131 90.8
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 4.3e-63 244.6 133 92.5
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 5.7e-63 244.2 131 90.1
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 7.4e-63 243.8 133 89.5
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 7.4e-63 243.8 131 90.1
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 9.7e-63 243.4 130 89.2
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 1.3e-62 243.0 131 89.3
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 1.3e-62 243.0 186 70.4
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 1.6e-62 242.7 131 90.1
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 1.6e-62 242.7 131 89.3
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 1.6e-62 242.7 131 90.1
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 2.2e-62 242.3 131 89.3
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.2e-62 242.3 131 89.3
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.2e-62 242.3 131 89.3
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 2.2e-62 242.3 131 90.8
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 2.2e-62 242.3 128 91.4
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 2.2e-62 242.3 131 89.3
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 3.7e-62 241.5 133 88.7
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 3.7e-62 241.5 133 91.0
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 4.8e-62 241.1 131 89.3
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.8e-62 241.1 131 88.5
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 8.2e-62 240.4 133 87.2
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 8.2e-62 240.4 129 89.1
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 8.2e-62 240.4 129 89.9
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 8.2e-62 240.4 130 88.5
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 1.4e-61 239.6 133 86.5
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.4e-61 239.6 129 91.5
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.8e-61 239.2 133 86.5
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.8e-61 239.2 131 87.8
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.8e-61 239.2 131 89.3
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 2.4e-61 238.8 129 89.1
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 2.4e-61 238.8 129 89.9
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.4e-61 238.8 131 88.5
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 3.1e-61 238.4 129 89.1
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 4.1e-61 238.0 131 87.8
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 5.3e-61 237.7 133 88.7
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 6.9e-61 237.3 132 87.1
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 9.0e-61 236.9 132 87.1
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 4.5e-60 234.6 131 86.3
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 7.7e-60 233.8 126 90.5
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 2.2e-59 232.3 131 86.3
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.2e-59 232.3 131 87.0
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.2e-59 232.3 131 87.0
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 2.9e-59 231.9 129 86.0
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 2.9e-59 231.9 129 86.0
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 2.9e-59 231.9 129 86.0
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 6.5e-59 230.7 129 85.3
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 6.5e-59 230.7 131 85.5
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 1.1e-58 229.9 129 86.0
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.1e-58 229.9 131 84.0
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.1e-58 229.9 131 85.5
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 1.9e-58 229.2 131 85.5
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 2.5e-58 228.8 129 86.8
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 3.2e-58 228.4 130 84.6
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 3.2e-58 228.4 126 87.3
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 7.2e-58 227.3 131 83.2
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 9.4e-58 226.9 131 82.4
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 9.4e-58 226.9 131 84.0
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 9.4e-58 226.9 131 84.0
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 9.4e-58 226.9 129 86.0
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.2e-57 226.5 154 74.7
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 1.6e-57 226.1 129 86.0
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 1.6e-57 226.1 129 86.0
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 2.7e-57 225.3 133 83.5
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 2.7e-57 225.3 129 86.0
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 3.6e-57 224.9 123 87.8
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 6.1e-57 224.2 129 84.5
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 1.0e-56 223.4 129 84.5
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 1.8e-56 222.6 129 84.5
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.3e-56 222.2 131 83.2
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 6.7e-56 220.7 129 84.5
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 6.7e-56 220.7 129 84.5
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 2.0e-55 219.2 128 82.0
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 9.7e-55 216.9 132 79.5
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 9.7e-55 216.9 132 79.5
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.8e-53 212.6 161 70.2
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 5.3e-53 211.1 161 69.6
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.9e-51 205.3 136 74.3
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 1.2e-49 199.9 195 56.4
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.2e-49 199.9 136 71.3
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.6e-49 199.5 127 76.4
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.1e-49 199.1 127 74.0
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 3.0e-48 195.3 131 77.9
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 8.8e-48 193.7 130 77.7
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 9.7e-47 190.3 102 87.3
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.1e-45 186.8 131 74.8
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 1.4e-45 186.4 133 75.9
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 1.8e-45 186.0 123 69.9
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 2.4e-45 185.7 132 65.2
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 7.0e-45 184.1 129 65.1
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.7e-43 179.5 130 66.9
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.4e-40 169.9 87 96.6
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 2.3e-40 169.1 109 73.4
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 8.8e-40 167.2 129 62.0
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 7.4e-39 164.1 88 93.2
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 9.7e-39 163.7 137 67.2
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.7e-38 162.9 88 93.2
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.6e-36 156.4 88 88.6
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 2.6e-36 155.6 88 87.5
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 5.9e-36 154.5 79 89.9
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.3e-35 153.3 92 80.4
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.8e-35 151.8 85 82.4
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 9.4e-34 147.1 85 81.2
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 1.0e-32 143.7 135 60.7
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 2.3e-32 142.5 71 94.4
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 1.2e-31 140.2 86 80.2
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 2.6e-31 139.0 86 79.1
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 2.6e-31 139.0 86 79.1
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.3e-30 136.7 87 77.0
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.3e-30 136.7 85 78.8
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.7e-30 136.3 75 84.0
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 9.1e-29 130.6 89 76.4
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 1.2e-28 130.2 100 70.0
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.6e-28 129.8 68 86.8
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 5.9e-28 127.9 80 80.0
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.0e-24 117.1 65 81.5
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 7.7e-20 100.9 86 58.1
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.1e-18 97.1 86 62.8
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 2.8e-17 92.4 46 89.1
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.3e-16 89.4 76 56.6
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 5.2e-16 88.2 45 84.4
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 1.1e-13 80.5 56 76.8
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.2e-09 67.0 42 76.2
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.6e-09 65.5 47 70.2
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 4.7e-09 65.1 41 70.7


User provided reference genes

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