Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 2085.5 1080 100.0
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 2043.5 1062 99.2
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1660.2 1069 77.5
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1644.0 1080 76.8
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1638.2 1073 76.2
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1627.1 1188 74.5
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1626.3 1072 75.7
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1621.7 1076 75.1
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1619.8 1092 74.7
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1602.8 1085 74.0
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1598.6 1070 75.0
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1595.9 1066 75.2
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1595.1 1072 74.5
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1589.7 1072 73.4
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1586.6 1003 77.7
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1586.6 1077 73.7
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1584.3 1069 74.0
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1584.3 1069 73.9
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1583.9 1110 73.3
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1583.2 1092 74.3
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1582.0 1072 73.7
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1574.7 1073 73.9
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1574.3 1073 73.8
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1572.0 1073 73.8
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1570.1 1080 73.1
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1564.3 1077 73.4
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1560.4 1157 69.7
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1559.7 1067 75.0
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1558.9 1072 72.0
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1555.0 1140 70.8
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1548.5 965 80.2
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1546.6 1076 72.7
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1546.2 1074 70.8
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1542.7 1117 74.5
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1538.5 1116 71.2
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1536.2 1072 72.7
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1535.8 1068 72.6
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1533.9 1074 72.1
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1531.2 997 75.9
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1531.2 1083 71.5
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1529.6 1077 72.5
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1520.8 1079 72.4
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1516.1 1072 70.3
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1510.4 1065 71.9
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1505.7 1064 71.0
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1504.6 1093 71.3
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1503.8 1066 71.7
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1502.6 1069 70.3
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1498.8 1078 70.4
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1495.7 1066 71.2
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1492.6 1072 69.3
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1491.5 1069 69.5
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1489.6 1066 71.3
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1488.4 1077 70.1
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1487.2 1068 70.6
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1484.9 1070 71.2
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1479.2 1070 69.0
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1474.9 971 75.1
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1468.0 945 78.4
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1467.2 1069 69.6
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1464.1 1069 69.5
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1462.2 1076 69.3
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1458.4 1069 69.3
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1455.3 1088 67.8
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1453.7 1070 69.3
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1445.6 978 75.1
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1444.9 1072 69.7
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1437.9 948 75.7
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1436.4 1225 63.1
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1428.3 1099 66.9
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1421.8 998 71.5
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1421.0 1071 68.3
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1414.8 947 74.4
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1413.7 988 71.1
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1403.7 1002 69.3
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1401.7 1003 69.4
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1379.8 1002 68.4
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1306.2 978 65.5
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1296.2 1093 67.3
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1290.0 966 69.6
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1251.1 880 71.7
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1250.3 868 72.8
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1247.6 1085 62.0
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1243.0 1010 61.5
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1239.9 1004 62.3
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1226.1 1004 61.4
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1158.7 1134 56.3
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1157.5 1006 56.9
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 2.2e-306 1055.8 1012 53.9
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 3.1e-300 1035.4 636 78.9
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 1.3e-295 1020.0 584 90.8
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.2e-291 1006.9 1012 51.8
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 5.4e-289 998.0 1022 52.3
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 5.1e-287 991.5 751 65.5
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 5.4e-281 971.5 997 53.7
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 3.1e-252 875.9 616 70.9
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 1.0e-247 860.9 586 74.2
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 7.3e-209 731.9 493 74.2
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 1.1e-196 691.4 518 69.3
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 4.6e-195 686.0 472 71.0
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 9.9e-190 668.3 646 57.1
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.4e-180 637.9 814 47.7
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.0e-174 617.5 459 66.9
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 1.8e-170 604.4 622 54.8
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 2.4e-167 594.0 410 71.2
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 1.6e-163 581.3 376 78.2
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 1.3e-149 535.0 397 67.8
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 2.9e-149 533.9 334 83.5
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 2.5e-148 530.8 368 75.5
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 7.0e-127 459.5 305 75.7
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 9.4e-124 449.1 328 68.6
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.7e-123 447.6 285 78.6
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 1.4e-119 435.3 392 61.0
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.3e-112 412.1 294 67.7
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.3e-109 401.4 815 36.3
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 5.7e-105 386.7 199 90.5
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.2e-91 342.4 241 71.0
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.8e-82 312.0 218 72.5
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 3.1e-82 311.2 292 51.0
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 3.2e-63 248.1 142 85.2
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.2e-62 246.1 168 75.0
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 1.2e-57 229.6 185 64.3
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 6.7e-53 213.8 186 69.9
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.4e-42 179.5 150 58.0
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 1.5e-41 176.0 105 81.0
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 3.9e-37 161.4 215 46.5
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 5.7e-36 157.5 139 55.4
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.1e-34 153.3 169 49.7
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 6.9e-34 150.6 148 52.0
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 6.5e-32 144.1 112 63.4
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 1.6e-30 139.4 99 64.6
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 2.3e-29 135.6 114 62.3
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 8.8e-29 133.7 94 68.1
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 1.7e-27 129.4 90 67.8
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.1e-26 126.7 119 58.0
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.1e-26 126.7 119 58.0
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 1.5e-25 122.9 103 58.3
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 1.3e-24 119.8 88 65.9
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 1.4e-21 109.8 73 75.3
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 2.0e-20 105.9 190 36.3
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 1.4e-18 99.8 73 65.8
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 1.8e-18 99.4 132 44.7
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.6e-17 95.5 69 66.7
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.2e-15 88.2 68 64.7
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 1.8e-13 82.8 137 40.9
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 6.3e-11 74.3 57 66.7
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 8.2e-11 73.9 67 56.7
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 1.2e-09 70.1 60 60.0
CAN.G1473.1 Capsicum annuum HOM05D004422 ORTHO05D013213 3.8e-08 65.1 34 88.2
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 1.6e-06 59.7 29 82.8
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 2.1e-06 59.3 37 70.3
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 6.1e-06 57.8 44 63.6
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 6.1e-06 57.8 44 63.6
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 6.1e-06 57.8 44 63.6


User provided reference genes

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