Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 4.9e-225 784.3 427 100.0
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 2.3e-214 748.8 404 97.3
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 6.5e-169 597.8 466 74.0
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 4.9e-124 448.7 348 69.0
Nitab4.5_0025236g0010 Nicotiana tabacum HOM05D003719 ORTHO05D004116 8.9e-110 401.4 400 59.8
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 5.1e-97 359.0 424 52.6
Peaxi162Scf00245g00417 Petunia axillaris HOM05D003719 ORTHO05D004116 7.6e-93 345.1 393 52.9
Peaxi162Scf00907g00023 Petunia axillaris HOM05D003719 ORTHO05D004116 1.9e-91 340.5 347 57.3
Nitab4.5_0003123g0030 Nicotiana tabacum HOM05D003719 ORTHO05D004116 6.9e-86 322.0 449 48.1
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 2.8e-71 273.5 353 46.5
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 3.7e-71 273.1 356 47.2
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 2.4e-70 270.4 353 47.6
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 2.4e-70 270.4 337 49.0
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 3.4e-69 266.5 437 42.8
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 3.0e-65 253.4 344 46.2
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 1.9e-64 250.8 348 45.1
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 1.6e-63 247.7 454 38.3
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 8.2e-63 245.4 357 44.3
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 2.4e-62 243.8 356 43.5
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 6.9e-62 242.3 360 41.7
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 1.5e-61 241.1 357 42.9
Rhsim07G0047900 Rhododendron simsii HOM05D003719 ORTHO05D004116 1.7e-60 237.7 412 40.3
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 2.2e-60 237.3 347 44.7
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 2.9e-60 236.9 363 43.0
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 3.8e-60 236.5 449 37.4
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 1.9e-59 234.2 353 41.6
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 1.9e-59 234.2 357 43.4
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 7.1e-59 232.3 355 41.7
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 9.3e-59 231.9 357 41.5
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 9.3e-59 231.9 357 41.5
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 1.8e-57 227.6 357 41.7
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 2.3e-57 227.3 357 41.7
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 3.0e-57 226.9 351 41.9
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 3.9e-57 226.5 354 41.5
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 5.1e-57 226.1 360 40.6
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 6.7e-57 225.7 369 40.1
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 8.7e-57 225.3 366 39.3
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 8.7e-57 225.3 337 43.9
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 1.1e-56 224.9 367 39.2
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 3.3e-56 223.4 358 41.9
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 5.7e-56 222.6 345 41.7
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 5.7e-56 222.6 413 38.3
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 9.7e-56 221.9 367 39.0
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 1.3e-55 221.5 502 34.3
FAN06G0622 Fragaria x ananassa HOM05D003719 ORTHO05D004116 4.8e-55 219.5 379 40.6
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 6.3e-55 219.2 341 41.6
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 8.2e-55 218.8 339 42.5
FAN10G3972 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.8e-54 217.6 378 40.2
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 2.4e-54 217.2 351 40.5
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 2.4e-54 217.2 334 42.8
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 2.4e-54 217.2 337 40.7
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 5.3e-54 216.1 432 35.6
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 2.6e-53 213.8 358 39.4
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 3.4e-53 213.4 354 40.4
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 4.5e-53 213.0 353 38.8
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 5.9e-53 212.6 374 38.0
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 5.9e-53 212.6 348 40.2
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 2.9e-52 210.3 340 39.7
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 5.0e-52 209.5 359 38.2
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 6.5e-52 209.1 353 38.2
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 1.1e-51 208.4 337 39.8
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 2.5e-51 207.2 347 40.6
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 2.5e-51 207.2 355 39.2
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 3.2e-51 206.8 353 41.1
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 1.6e-50 204.5 366 35.5
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 2.1e-50 204.1 353 39.1
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 4.6e-50 203.0 332 37.7
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 3.0e-49 200.3 341 39.6
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 3.9e-49 199.9 351 38.2
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 5.7e-48 196.1 370 38.1
Sabra13G0061200 Salix brachista HOM05D003719 ORTHO05D004116 9.7e-48 195.3 352 37.2
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 9.7e-48 195.3 351 37.9
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 2.8e-47 193.7 357 39.2
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 8.2e-47 192.2 337 39.2
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 3.1e-46 190.3 361 36.8
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 3.1e-46 190.3 357 37.8
Prupe.2G107000 Prunus persica HOM05D003719 ORTHO05D004116 9.1e-46 188.7 327 41.3
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 9.1e-46 188.7 353 36.5
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 9.1e-46 188.7 331 38.7
Oeu034882.1 Olea europaea HOM05D003719 ORTHO05D004116 4.5e-45 186.4 314 42.4
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 5.9e-45 186.0 330 38.5
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 5.9e-45 186.0 329 38.6
FvH4_7g08280 Fragaria vesca HOM05D003719 ORTHO05D004116 5.9e-45 186.0 330 39.7
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 5.9e-45 186.0 346 37.9
Cpa.g.sc73.30 Carica papaya HOM05D003719 ORTHO05D004116 7.7e-45 185.7 316 41.1
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 1.3e-44 184.9 338 38.8
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 3.8e-44 183.3 357 35.9
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 5.0e-44 183.0 330 38.2
Oeu045633.2 Olea europaea HOM05D003719 ORTHO05D004116 5.0e-44 183.0 308 41.2
Haze_15777 Corylus avellana HOM05D003719 ORTHO05D004116 6.5e-44 182.6 322 40.1
Lj9A617T60 Lonicera japonica HOM05D003719 ORTHO05D004116 6.5e-44 182.6 287 43.2
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 1.1e-43 181.8 346 37.3
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 1.4e-43 181.4 347 35.7
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 1.4e-43 181.4 361 36.6
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 1.9e-43 181.0 334 38.6
VMungo0331G0617 Vigna mungo HOM05D003719 ORTHO05D004116 1.9e-43 181.0 319 38.2
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 3.2e-43 180.3 353 36.8
Glyma.03G094200 Glycine max HOM05D003719 ORTHO05D004116 1.2e-42 178.3 344 37.2
Lj3g0017682 Lotus japonicus HOM05D003719 ORTHO05D004116 4.7e-42 176.4 355 37.2
Lsat_1_v5_gn_1_89600 Lactuca sativa HOM05D003719 ORTHO05D004116 6.1e-42 176.0 343 37.3
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 7.9e-42 175.6 355 35.8
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 7.9e-42 175.6 355 35.8
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 7.9e-42 175.6 355 35.8
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 7.9e-42 175.6 370 35.7
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 1.4e-41 174.9 341 36.4
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 2.3e-41 174.1 352 37.8
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 2.3e-41 174.1 363 35.8
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 2.3e-41 174.1 331 36.9
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 2.3e-41 174.1 363 35.8
FAN03G1006 Fragaria x ananassa HOM05D003719 ORTHO05D004116 2.3e-41 174.1 366 36.9
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 3.0e-41 173.7 346 34.7
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 6.7e-41 172.6 331 36.9
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 1.5e-40 171.4 331 37.8
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 2.6e-40 170.6 356 36.8
AUR62038028 Chenopodium quinoa HOM05D003719 ORTHO05D004116 3.3e-40 170.2 315 38.1
SGA_v2.0_scaffold95G28748 Striga asiatica HOM05D003719 ORTHO05D004116 5.7e-40 169.5 411 37.7
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 9.7e-40 168.7 344 36.6
Lalb_Chr23g0264911 Lupinus albus HOM05D003719 ORTHO05D004116 9.7e-40 168.7 334 35.9
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 2.2e-39 167.5 315 37.8
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 6.3e-39 166.0 333 36.3
COL.COLO4_32214 Corchorus olitorius HOM05D003719 ORTHO05D004116 1.4e-38 164.9 297 40.4
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 2.4e-38 164.1 441 32.4
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 7.0e-38 162.5 330 34.5
vmacro13601 Vaccinium macrocarpon HOM05D003719 ORTHO05D004116 1.5e-37 161.4 335 36.7
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 2.6e-37 160.6 357 33.3
Lsat_1_v5_gn_7_34101 Lactuca sativa HOM05D003719 ORTHO05D004116 1.0e-36 158.7 349 35.2
Oeu032776.1 Olea europaea HOM05D003719 ORTHO05D004116 3.8e-36 156.8 299 37.8
SGA_v2.0_scaffold4G02229 Striga asiatica HOM05D003719 ORTHO05D004116 1.5e-35 154.8 403 35.7
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 1.5e-35 154.8 315 36.2
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 2.5e-35 154.1 362 33.4
DCAR_029570 Daucus carota HOM05D003719 ORTHO05D004116 2.7e-34 150.6 331 34.1
Lalb_Chr13g0290971 Lupinus albus HOM05D003719 ORTHO05D004116 9.7e-32 142.1 343 33.5
PSO732G0471 Papaver somniferum HOM05D003719 ORTHO05D004116 9.7e-32 142.1 318 35.5
BraA09t37591Z Brassica rapa HOM05D003719 ORTHO05D004116 3.7e-31 140.2 336 33.3
Lalb_Chr07g0194591 Lupinus albus HOM05D003719 ORTHO05D004116 6.3e-31 139.4 341 32.0
SHI54853 Sapria himalayana HOM05D003719 ORTHO05D004116 1.4e-30 138.3 320 32.8
Hma1.2p1_0462F.1_g158020 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 1.6e-29 134.8 297 38.7
Lalb_Chr12g0210141 Lupinus albus HOM05D003719 ORTHO05D004116 1.3e-28 131.7 346 30.6
Hund26916 Selenicereus undatus HOM05D003719 ORTHO05D004116 1.1e-27 128.6 322 33.2
AUR62014507 Chenopodium quinoa HOM05D003719 ORTHO05D004116 1.8e-25 121.3 286 34.3
DCAR_015727 Daucus carota HOM05D003719 ORTHO05D004116 4.0e-25 120.2 230 38.7
Migut.O00699 Erythranthe guttata HOM05D003719 ORTHO05D004116 8.8e-25 119.0 126 53.2
BcaB01g05152 Brassica carinata HOM05D003719 ORTHO05D004116 1.2e-24 118.6 316 29.4
BolC3t13474H Brassica oleracea HOM05D003719 ORTHO05D004116 1.2e-24 118.6 316 29.4
A03p08460 Brassica napus HOM05D003719 ORTHO05D004116 3.4e-24 117.1 312 30.8
BraA03t10169Z Brassica rapa HOM05D003719 ORTHO05D004116 3.4e-24 117.1 312 30.8
Ca_15283_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 4.4e-24 116.7 256 34.8
Ca_15419_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 4.4e-24 116.7 256 34.8
Migut.O00700 Erythranthe guttata HOM05D003719 ORTHO05D004116 4.4e-24 116.7 152 47.4
DCAR_025000 Daucus carota HOM05D003719 ORTHO05D004116 1.7e-23 114.8 192 41.1
FAN01G0294 Fragaria x ananassa HOM05D003719 ORTHO05D004116 2.4e-22 110.9 251 35.5
BcaB01g04909 Brassica carinata HOM05D003719 ORTHO05D004116 4.1e-22 110.2 382 28.5
C03p09860 Brassica napus HOM05D003719 ORTHO05D004116 5.0e-20 103.2 316 28.5
PSO732G0498 Papaver somniferum HOM05D003719 ORTHO05D004116 6.5e-20 102.8 287 32.4
PSO732G0548 Papaver somniferum HOM05D003719 ORTHO05D004116 1.5e-19 101.7 287 32.1
SEGI_39270 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 3.2e-19 100.5 410 26.8
Nn7g37398 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.6e-18 98.2 70 64.3
BraA09t38097Z Brassica rapa HOM05D003719 ORTHO05D004116 6.1e-18 96.3 180 36.7
PSO017G2223 Papaver somniferum HOM05D003719 ORTHO05D004116 6.8e-17 92.8 226 35.4
Glyma.03G111600 Glycine max HOM05D003719 ORTHO05D004116 8.8e-17 92.4 240 33.3
arahy.Tifrunner.gnm1.ann1.E07VAV Arachis hypogaea HOM05D003719 ORTHO05D004116 1.5e-16 91.7 346 29.2
HanXRQChr04g0117671 Helianthus annuus HOM05D003719 ORTHO05D004116 5.7e-16 89.7 95 43.2
Ah.05g177090 Amaranthus hybridus HOM05D000308 ORTHO05D005285 1.7e-15 88.2 269 29.7
Mapoly0009s0028 Marchantia polymorpha HOM05D003719 ORTHO05D004116 2.8e-15 87.4 82 47.6
Psat4g207560 Pisum sativum HOM05D003719 ORTHO05D004116 2.8e-15 87.4 97 43.3
PSO170G3936 Papaver somniferum HOM05D033783 ORTHO05D004116 8.3e-15 85.9 68 60.3
SEGI_28532 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 1.1e-14 85.5 56 60.7
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 1.4e-14 85.1 76 50.0
CAN.G1612.6 Capsicum annuum HOM05D003719 ORTHO05D004116 1.8e-14 84.7 67 61.2
PSO017G2979 Papaver somniferum HOM05D033783 ORTHO05D004116 1.8e-14 84.7 68 58.8
PSO017G0756 Papaver somniferum HOM05D003719 ORTHO05D004116 5.4e-14 83.2 65 56.9
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 1.2e-13 82.0 84 46.4
CAN.G1260.1 Capsicum annuum HOM05D003719 ORTHO05D004116 4.5e-13 80.1 65 60.0
PSO675G5773 Papaver somniferum HOM05D003719 ORTHO05D004116 5.9e-13 79.7 70 55.7
Lalb_Chr13g0290921 Lupinus albus HOM05D003719 ORTHO05D004116 5.0e-12 76.6 62 54.8
Mapoly0024s0010 Marchantia polymorpha HOM05D003719 ORTHO05D004116 1.5e-11 75.1 103 41.7
PSO349G0045 Papaver somniferum HOM05D003719 ORTHO05D004116 1.9e-11 74.7 309 27.8
Mapoly0010s0167 Marchantia polymorpha HOM05D003719 ORTHO05D004116 7.2e-11 72.8 108 39.8
CAN.G1612.7 Capsicum annuum HOM05D000541 ORTHO05D000137 1.2e-10 72.0 57 61.4
Aqoxy7G02797 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 4.7e-10 70.1 73 38.4
FAN01G0740 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.8e-09 68.2 57 54.4
SHI50054 Sapria himalayana HOM05D003719 ORTHO05D004116 2.3e-09 67.8 292 26.7
PSO732G0588 Papaver somniferum HOM05D003719 ORTHO05D004116 2.0e-08 64.7 57 52.6
arahy.Tifrunner.gnm1.ann1.FLAY3S Arachis hypogaea HOM05D003719 ORTHO05D004116 6.3e-07 59.7 63 36.5
arahy.Tifrunner.gnm1.ann1.RGD672 Arachis hypogaea HOM05D022377 ORTHO05D004116 1.8e-06 58.2 78 33.3
arahy.Tifrunner.gnm1.ann1.SX0HJ3 Arachis hypogaea HOM05D022377 ORTHO05D004116 2.4e-06 57.8 81 33.3


User provided reference genes

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