Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 2.4e-195 685.3 336 100.0
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 1.5e-189 666.0 336 97.9
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 1.2e-183 646.4 336 94.0
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 8.4e-172 607.1 336 88.4
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.2e-170 603.2 336 87.2
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.3e-169 599.7 336 87.2
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 2.9e-140 502.3 333 72.4
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 1.1e-139 500.4 336 72.3
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 1.9e-139 499.6 334 72.5
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 3.2e-139 498.8 336 71.7
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 4.2e-139 498.4 336 74.1
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 4.2e-139 498.4 335 71.0
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 5.7e-136 488.0 331 73.4
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 1.3e-135 486.9 336 71.4
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 4.5e-133 478.4 330 70.0
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 1.0e-132 477.2 339 71.4
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 4.2e-131 471.9 338 71.0
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.2e-130 470.3 336 70.2
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 3.6e-130 468.8 338 69.8
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 1.1e-128 463.8 332 69.6
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 2.0e-128 463.0 332 69.0
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 3.3e-128 462.2 337 69.4
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 7.4e-128 461.1 335 68.7
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 1.7e-127 459.9 332 68.4
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 4.8e-127 458.4 337 67.7
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 8.2e-127 457.6 332 68.4
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.1e-126 457.2 336 69.6
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 1.1e-126 457.2 332 67.8
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 1.1e-126 457.2 330 69.4
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.8e-126 456.4 332 67.8
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 1.8e-126 456.4 332 68.4
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 3.1e-126 455.7 332 69.0
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 4.1e-126 455.3 332 68.7
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 5.3e-126 454.9 335 68.4
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.2e-125 453.8 336 68.2
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 1.2e-125 453.8 336 66.1
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 1.6e-125 453.4 331 69.5
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 2.6e-125 452.6 335 67.2
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 4.5e-125 451.8 336 67.9
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 5.9e-125 451.4 329 69.3
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 1.3e-124 450.3 338 68.6
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 2.9e-124 449.1 336 67.6
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 3.8e-124 448.7 332 67.5
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 6.5e-124 448.0 336 67.6
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 6.5e-124 448.0 337 67.4
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 8.5e-124 447.6 332 67.5
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 8.5e-124 447.6 329 66.9
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.1e-123 447.2 333 66.7
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 1.9e-123 446.4 337 65.9
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 2.5e-123 446.0 332 69.3
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 7.2e-123 444.5 366 62.8
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 1.6e-122 443.4 333 66.1
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 4.7e-122 441.8 332 66.9
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 3.0e-121 439.1 333 66.7
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 4.0e-121 438.7 341 65.1
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.8e-121 437.6 339 65.2
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.8e-121 437.6 339 65.2
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 1.2e-120 437.2 333 64.6
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.5e-120 436.8 333 64.3
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 9.7e-120 434.1 331 67.4
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 6.3e-119 431.4 331 66.2
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 1.8e-118 429.9 344 64.8
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.1e-118 429.1 380 59.7
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 4.5e-117 425.2 347 62.0
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 1.0e-116 424.1 331 63.7
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.9e-115 419.9 324 68.5
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 1.2e-114 417.2 332 63.6
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 3.1e-110 402.5 331 63.4
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 8.6e-108 394.4 332 61.1
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 1.1e-107 394.0 337 59.6
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 1.5e-107 393.7 332 61.1
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 2.5e-107 392.9 330 60.9
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 2.1e-106 389.8 292 67.8
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 4.7e-106 388.7 330 60.9
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 8.0e-106 387.9 330 60.3
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 1.0e-105 387.5 336 59.5
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 2.3e-105 386.3 332 59.9
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 5.2e-105 385.2 333 59.5
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 1.5e-104 383.6 330 60.3
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 2.6e-104 382.9 330 60.3
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 2.6e-104 382.9 330 60.3
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 2.6e-104 382.9 336 57.7
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 3.4e-104 382.5 340 57.9
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 2.2e-103 379.8 332 58.7
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 9.2e-102 374.4 352 55.7
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 2.9e-100 369.4 330 56.4
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 3.9e-100 369.0 328 59.5
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 5.0e-100 368.6 338 58.6
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 8.6e-100 367.9 340 57.4
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 9.5e-99 364.4 307 60.9
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 6.1e-98 361.7 328 57.0
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 8.0e-98 361.3 243 73.3
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 3.4e-96 355.9 343 55.1
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 3.2e-94 349.4 336 56.0
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.7e-87 327.0 309 57.3
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 1.2e-85 320.9 245 66.5
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 2.1e-82 310.1 278 57.9
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.3e-79 300.8 357 47.6
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 1.1e-75 287.7 339 48.7
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 1.9e-70 270.4 347 45.5
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 7.1e-70 268.5 180 73.9
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 1.4e-62 244.2 464 34.7
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 2.1e-61 240.4 311 45.7
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 1.8e-57 227.3 338 39.9
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 2.6e-56 223.4 147 74.1
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 3.8e-55 219.5 337 39.5
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 1.4e-54 217.6 163 66.9
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 3.5e-53 213.0 193 59.1
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 3.2e-38 163.3 177 51.4
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 5.5e-38 162.5 147 57.1
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.2e-37 161.4 166 51.2
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 3.0e-36 156.8 163 51.5
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 4.8e-34 149.4 102 66.7
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 1.5e-32 144.4 153 48.4
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 1.7e-26 124.4 81 70.4
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 4.8e-26 122.9 74 73.0
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 5.9e-24 115.9 63 79.4
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 7.4e-19 99.0 132 42.4
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 1.2e-13 81.6 57 64.9
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 3.6e-13 80.1 131 42.0
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 4.4e-11 73.2 58 55.2
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 8.2e-10 68.9 61 65.6
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 8.2e-10 68.9 80 43.8
Dinv43551 Davidia involucrata HOM05D006268 ORTHO05D180404 1.0e-07 62.0 80 42.5
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 2.2e-07 60.8 81 43.2
SGA_v2.0_scaffold7G03663 Striga asiatica HOM05D000015 ORTHO05D000984 5.5e-06 56.2 33 75.8


User provided reference genes

Program Settings