Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 4.8e-307 1057.0 530 100.0
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 7.7e-305 1049.7 530 99.2
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 6.3e-299 1030.0 528 97.5
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 2.4e-290 1001.5 530 94.5
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 9.5e-287 989.6 524 95.0
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 3.4e-276 954.5 529 88.8
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 5.8e-276 953.7 529 88.7
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 1.1e-274 949.5 529 88.7
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 2.4e-274 948.3 529 88.8
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 7.1e-274 946.8 523 88.9
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 9.2e-274 946.4 529 88.1
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 1.6e-273 945.7 527 88.8
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 2.7e-273 944.9 529 87.9
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 4.6e-273 944.1 529 87.7
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 7.8e-273 943.3 523 88.7
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 1.0e-272 943.0 525 88.4
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 1.3e-272 942.6 525 88.2
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 2.3e-272 941.8 525 88.6
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 3.0e-272 941.4 525 88.6
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 8.6e-272 939.9 529 87.3
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 1.1e-271 939.5 525 88.2
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 1.9e-271 938.7 529 87.7
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 2.5e-271 938.3 527 87.5
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 3.3e-271 937.9 523 88.3
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 5.6e-271 937.2 525 87.8
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 7.3e-271 936.8 523 88.1
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 7.3e-271 936.8 529 88.1
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 9.5e-271 936.4 529 87.3
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 9.5e-271 936.4 523 87.4
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 1.2e-270 936.0 529 87.1
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 1.2e-270 936.0 521 88.3
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 2.1e-270 935.3 529 87.3
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 3.6e-270 934.5 542 85.8
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 3.6e-270 934.5 529 87.5
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 1.1e-269 932.9 525 87.8
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 1.4e-269 932.6 529 86.0
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 3.1e-269 931.4 520 87.9
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 3.1e-269 931.4 523 87.6
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 5.2e-269 930.6 529 86.2
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 1.2e-268 929.5 525 87.4
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 1.5e-268 929.1 519 88.1
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 3.4e-268 927.9 564 83.0
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 9.9e-268 926.4 523 86.8
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 9.9e-268 926.4 523 87.2
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 2.2e-267 925.2 543 84.9
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 2.2e-267 925.2 509 90.2
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 4.9e-267 924.1 517 87.2
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 5.4e-266 920.6 527 85.2
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 5.4e-266 920.6 525 86.3
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 2.1e-265 918.7 571 81.3
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 4.6e-265 917.5 523 86.0
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 7.8e-265 916.8 529 85.8
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.0e-264 916.4 557 82.9
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 3.0e-264 914.8 557 82.9
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 5.1e-264 914.1 529 86.4
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 4.3e-263 911.0 529 84.1
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 7.3e-263 910.2 529 84.7
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 9.6e-263 909.8 525 85.3
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 1.2e-262 909.4 529 84.1
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 2.1e-262 908.7 529 84.5
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 2.8e-262 908.3 525 85.5
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 2.8e-262 908.3 525 85.5
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 2.8e-262 908.3 553 82.5
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 4.7e-262 907.5 519 85.7
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 6.2e-262 907.1 525 85.5
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 6.2e-262 907.1 525 85.5
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 6.2e-262 907.1 505 88.3
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 2.4e-261 905.2 525 85.0
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 4.0e-261 904.4 525 85.5
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 4.0e-261 904.4 525 85.5
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 8.9e-261 903.3 525 85.1
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 1.3e-259 899.4 513 85.2
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 2.2e-259 898.7 543 83.1
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 8.4e-259 896.7 543 82.1
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 1.9e-258 895.6 532 83.6
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 2.4e-258 895.2 529 81.9
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 5.4e-258 894.0 530 82.5
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 1.6e-257 892.5 533 83.9
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 8.7e-256 886.7 529 81.7
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 3.3e-255 884.8 590 76.1
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 3.3e-255 884.8 590 76.1
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 9.6e-255 883.2 529 83.2
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 4.4e-252 874.4 521 84.3
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 1.6e-249 865.9 586 75.3
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 2.1e-249 865.5 558 78.5
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 3.1e-245 851.7 513 83.4
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 7.9e-241 837.0 523 80.7
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 4.5e-236 821.2 524 77.1
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 7.1e-234 813.9 484 83.9
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 7.4e-231 803.9 607 70.3
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 4.8e-230 801.2 518 75.1
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 4.1e-229 798.1 519 76.5
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 2.5e-223 778.9 521 73.9
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 2.0e-212 742.7 490 76.3
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 1.9e-210 736.1 498 72.7
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 2.2e-206 722.6 386 92.2
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 7.7e-204 714.1 381 92.1
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 1.5e-199 699.9 520 66.5
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 2.6e-199 699.1 381 90.3
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 1.4e-197 693.3 352 98.3
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 1.0e-192 677.2 523 65.4
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 4.8e-190 668.3 414 80.4
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 6.3e-190 667.9 530 68.1
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 4.9e-182 641.7 532 61.3
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 4.9e-182 641.7 392 80.4
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.0e-176 624.0 324 92.9
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 9.2e-173 610.9 401 76.6
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 6.0e-140 501.9 447 62.0
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 1.1e-136 491.1 282 83.3
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 2.4e-133 479.9 277 86.3
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 9.3e-109 398.3 354 60.5
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 9.3e-109 398.3 348 62.6
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 8.8e-99 365.2 483 42.0
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.1e-96 358.2 527 38.7
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 2.6e-95 353.6 314 60.2
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 8.8e-91 338.6 208 81.2
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 4.8e-89 332.8 177 88.7
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 1.8e-80 304.3 547 36.6
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 1.2e-79 301.6 169 89.3
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 8.8e-75 285.4 375 43.7
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 1.6e-71 274.6 161 82.6
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 6.4e-57 226.1 162 66.7
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 4.6e-55 219.9 196 57.1
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 3.6e-44 183.7 114 83.3
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 4.4e-34 150.2 112 67.9
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 9.9e-34 149.1 139 59.7
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 4.1e-32 143.7 92 77.2
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 3.5e-31 140.6 71 85.9
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 2.4e-27 127.9 72 86.1
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 2.6e-26 124.4 76 78.9
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 3.4e-26 124.0 78 76.9
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 5.8e-26 123.2 162 45.1
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 9.9e-26 122.5 80 71.2
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 6.4e-17 93.2 60 73.3
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 1.2e-15 89.0 47 78.7
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 3.0e-14 84.3 48 77.1
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 7.4e-13 79.7 77 55.8
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 1.1e-08 65.9 40 72.5
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 4.2e-08 63.9 81 40.7


User provided reference genes

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