Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 0.0e+00 1095.5 589 100.0
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 5.0e-297 1023.8 590 93.7
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 2.1e-287 991.9 590 90.8
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 8.4e-284 979.9 520 97.9
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 7.1e-283 976.9 520 97.5
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 7.8e-282 973.4 589 86.4
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 3.9e-257 891.3 590 81.9
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 5.3e-254 880.9 604 77.5
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 3.4e-253 878.2 590 81.0
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 6.5e-252 874.0 590 78.8
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 1.6e-250 869.4 590 80.0
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 1.3e-249 866.3 589 79.1
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 8.7e-249 863.6 590 80.0
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 4.3e-248 861.3 590 79.2
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 7.4e-248 860.5 589 75.7
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 7.4e-248 860.5 590 79.2
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 1.3e-247 859.8 590 79.7
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 2.1e-247 859.0 589 75.7
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 2.8e-247 858.6 589 78.4
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 3.7e-247 858.2 588 78.7
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 8.2e-247 857.1 596 79.5
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 8.2e-247 857.1 588 79.8
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.4e-246 855.5 590 79.5
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 5.3e-246 854.4 588 75.5
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 5.3e-246 854.4 590 75.6
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 5.3e-246 854.4 588 79.1
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 1.2e-245 853.2 590 79.2
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 2.0e-245 852.4 592 79.6
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 5.9e-245 850.9 588 79.4
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 5.9e-245 850.9 589 74.7
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 1.7e-244 849.4 590 78.3
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 5.0e-244 847.8 596 78.5
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 5.0e-244 847.8 588 78.7
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 5.0e-244 847.8 588 78.7
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 1.9e-243 845.9 589 73.9
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 1.9e-243 845.9 588 78.1
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 2.5e-243 845.5 588 77.7
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 5.5e-243 844.3 594 73.9
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 5.5e-243 844.3 594 77.8
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 5.5e-243 844.3 589 74.0
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 7.2e-243 844.0 590 74.7
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 7.2e-243 844.0 590 76.3
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 9.3e-243 843.6 594 77.6
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-242 843.2 590 74.7
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 6.1e-242 840.9 590 73.7
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 1.8e-241 839.3 590 78.3
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 2.3e-241 839.0 594 77.1
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 2.3e-241 839.0 588 78.2
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 3.0e-241 838.6 588 78.2
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 3.0e-241 838.6 588 78.2
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 3.0e-241 838.6 630 70.8
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 3.0e-241 838.6 589 77.6
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 5.1e-241 837.8 599 77.0
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 2.5e-240 835.5 594 76.8
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 2.5e-240 835.5 590 77.1
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 5.7e-240 834.3 590 74.4
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 9.7e-240 833.6 594 77.3
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 1.6e-239 832.8 590 76.8
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 2.2e-239 832.4 590 77.8
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 2.8e-239 832.0 590 77.5
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 3.7e-239 831.6 624 75.3
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 3.7e-239 831.6 630 70.0
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 4.8e-239 831.2 589 74.5
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 2.4e-238 828.9 590 73.7
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 4.1e-238 828.2 611 72.0
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 1.2e-237 826.6 590 73.2
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 2.6e-237 825.5 591 72.6
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 1.7e-236 822.8 590 73.2
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 1.1e-235 820.1 590 72.4
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 1.1e-235 820.1 593 76.1
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 2.5e-235 818.9 588 76.7
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 9.4e-235 817.0 588 76.2
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 2.1e-234 815.8 647 68.3
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 1.0e-233 813.5 592 75.3
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 3.0e-233 812.0 588 76.2
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 3.9e-233 811.6 590 75.8
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 5.1e-233 811.2 595 74.8
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 1.1e-232 810.1 590 75.9
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 3.3e-232 808.5 590 75.8
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 3.3e-232 808.5 590 75.8
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 3.3e-232 808.5 590 75.4
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 3.3e-232 808.5 588 76.0
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 7.4e-232 807.4 590 75.4
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 9.7e-232 807.0 590 75.6
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 2.8e-231 805.4 588 75.9
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 3.7e-231 805.1 596 70.8
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 6.3e-231 804.3 593 75.0
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 1.1e-230 803.5 588 75.9
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.4e-227 793.1 590 69.3
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 4.4e-224 781.6 614 70.7
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 2.8e-223 778.9 608 70.2
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 2.2e-220 769.2 557 72.0
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 3.3e-216 755.4 518 76.1
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 2.1e-210 736.1 614 66.1
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.8e-209 733.0 581 68.5
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 2.2e-199 699.5 435 89.7
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 3.5e-197 692.2 584 64.0
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 1.4e-193 680.2 606 58.6
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 5.2e-193 678.3 599 62.4
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 4.1e-190 668.7 587 62.2
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.1e-179 634.0 591 61.9
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.5e-163 580.5 434 70.7
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 4.2e-150 535.8 753 43.6
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 4.9e-143 512.3 465 63.7
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 3.5e-141 506.1 390 67.9
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 9.4e-126 454.9 608 44.2
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 6.9e-121 438.7 324 71.6
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 9.1e-121 438.3 329 69.6
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.4e-97 360.5 362 53.9
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 1.2e-85 321.6 631 34.7
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-83 315.1 215 74.9
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 4.9e-74 283.1 185 80.0
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 3.7e-66 256.9 149 89.3
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 3.2e-65 253.8 147 84.4
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 2.9e-58 230.7 635 31.3
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.1e-56 224.6 200 61.0
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 3.8e-50 203.8 106 95.3
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 4.9e-50 203.4 113 90.3
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-48 198.7 111 90.1
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 2.7e-48 197.6 113 88.5
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 5.1e-47 193.4 113 86.7
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 6.6e-47 193.0 113 86.7
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 9.0e-44 182.6 109 86.2
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 4.9e-42 176.8 106 86.8
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.0e-39 169.1 99 86.9
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 1.9e-38 164.9 97 83.5
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 7.3e-38 162.9 89 89.9
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 1.9e-33 148.3 82 90.2
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 5.6e-30 136.7 106 68.9
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.6e-29 135.2 106 67.9
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 3.0e-23 114.4 75 78.7
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 6.7e-23 113.2 145 46.2
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 8.7e-23 112.8 75 77.3
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 8.7e-23 112.8 152 46.7
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 1.4e-20 105.5 49 100.0
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 2.6e-19 101.3 91 63.7
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 2.5e-17 94.7 43 100.0
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 7.1e-17 93.2 88 56.8
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 7.1e-17 93.2 88 56.8
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 7.1e-17 93.2 88 56.8
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 6.1e-16 90.1 88 55.7


User provided reference genes

Program Settings