Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 4.9e-94 347.8 180 100.0
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 9.6e-90 333.6 180 94.4
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 9.3e-85 317.0 180 89.4
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 2.1e-84 315.8 179 89.9
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 1.4e-80 303.1 175 90.3
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 2.6e-79 298.9 181 82.3
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 2.6e-79 298.9 181 82.9
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 5.8e-79 297.7 178 82.6
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 5.8e-79 297.7 181 82.3
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 1.7e-78 296.2 181 81.2
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 1.7e-78 296.2 182 84.6
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.7e-78 296.2 182 83.0
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 1.7e-78 296.2 180 81.7
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 2.9e-78 295.4 181 82.3
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 2.9e-78 295.4 181 81.8
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 3.8e-78 295.0 181 82.9
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 8.4e-78 293.9 182 81.9
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 1.1e-77 293.5 181 81.2
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.1e-77 293.5 181 80.1
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.4e-77 293.1 181 80.7
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.5e-77 292.4 180 82.2
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.2e-77 292.0 182 81.3
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 4.2e-77 291.6 181 80.7
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 5.5e-77 291.2 179 80.4
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 5.5e-77 291.2 181 79.6
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 7.1e-77 290.8 181 80.1
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 7.1e-77 290.8 181 80.1
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 7.1e-77 290.8 182 80.2
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 7.1e-77 290.8 181 80.1
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 9.3e-77 290.4 181 80.1
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 9.3e-77 290.4 181 80.1
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 9.3e-77 290.4 182 80.8
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.2e-76 290.0 181 80.1
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 1.6e-76 289.7 181 80.1
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.6e-76 289.7 181 80.1
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 2.1e-76 289.3 181 80.1
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 2.7e-76 288.9 181 80.1
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 3.5e-76 288.5 181 79.6
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 4.6e-76 288.1 181 79.0
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 4.6e-76 288.1 181 79.0
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 6.0e-76 287.7 181 79.6
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 1.0e-75 287.0 181 79.6
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.0e-75 287.0 181 80.7
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.0e-75 287.0 180 79.4
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 1.3e-75 286.6 181 79.0
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.3e-75 286.6 181 79.0
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 1.8e-75 286.2 181 81.2
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 3.9e-75 285.0 181 79.0
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.1e-75 284.6 181 79.0
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 6.7e-75 284.3 182 79.1
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.5e-74 283.1 181 79.0
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 1.5e-74 283.1 182 77.5
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.9e-74 282.7 181 77.3
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 2.5e-74 282.3 177 79.7
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 3.3e-74 282.0 181 78.5
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 1.6e-73 279.6 179 79.3
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 2.1e-73 279.3 182 76.9
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 2.8e-73 278.9 181 76.2
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.7e-73 278.5 181 78.5
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 8.2e-73 277.3 182 76.4
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.1e-72 276.9 181 76.2
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.1e-72 276.9 181 76.2
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 1.4e-72 276.6 180 77.2
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 1.4e-72 276.6 181 77.3
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 1.8e-72 276.2 181 77.3
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 1.8e-72 276.2 181 77.3
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 1.8e-72 276.2 181 77.3
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 2.4e-72 275.8 182 78.0
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 3.1e-72 275.4 178 80.3
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 4.1e-72 275.0 182 76.4
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.3e-72 274.6 182 77.5
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 9.0e-72 273.9 180 78.3
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 9.0e-72 273.9 181 76.8
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.4e-71 271.9 182 77.5
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 3.4e-71 271.9 181 77.3
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 7.6e-71 270.8 183 76.0
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 7.6e-71 270.8 181 75.1
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 7.6e-71 270.8 181 77.3
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 1.3e-70 270.0 182 75.8
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.3e-70 270.0 181 76.8
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 2.2e-70 269.2 182 75.3
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 2.9e-70 268.9 181 72.9
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 3.8e-70 268.5 180 76.7
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.8e-70 268.5 181 75.7
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 5.0e-70 268.1 181 74.6
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 6.5e-70 267.7 181 73.5
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 8.5e-70 267.3 181 72.9
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 1.1e-69 266.9 190 74.7
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.9e-69 266.2 181 72.9
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 2.5e-69 265.8 181 74.6
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 9.3e-69 263.8 181 72.4
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 1.2e-68 263.5 183 74.3
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 1.6e-68 263.1 179 73.7
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 2.7e-68 262.3 179 73.2
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 3.6e-68 261.9 182 73.1
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 3.6e-68 261.9 190 74.7
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 7.9e-68 260.8 185 72.4
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.0e-67 260.4 182 73.1
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.0e-67 260.4 182 73.1
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 2.3e-67 259.2 180 72.2
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 3.0e-67 258.8 185 71.9
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 1.1e-66 256.9 182 72.5
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 4.3e-66 255.0 185 70.3
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 7.4e-66 254.2 183 71.0
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.3e-65 253.4 180 66.7
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.3e-65 253.4 178 73.6
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 2.4e-64 249.2 246 58.9
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 3.1e-64 248.8 180 70.0
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 3.1e-64 248.8 180 70.0
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 9.1e-64 247.3 172 68.6
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.2e-63 246.9 182 68.7
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 1.5e-63 246.5 190 70.5
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 5.9e-63 244.6 189 66.1
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.4e-61 240.0 181 67.4
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 4.2e-61 238.4 152 78.3
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 9.4e-61 237.3 132 90.2
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 9.4e-61 237.3 132 90.2
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.6e-60 235.0 181 66.9
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.8e-57 225.7 147 76.2
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 3.0e-51 205.7 131 79.4
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.1e-50 203.8 173 61.8
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 2.0e-50 203.0 141 75.2
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 1.1e-48 197.2 132 76.5
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 1.2e-42 177.2 116 75.0
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.3e-42 175.6 138 63.8
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 2.7e-39 166.0 189 50.8
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 2.7e-39 166.0 196 50.5
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 7.7e-39 164.5 187 48.7
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 5.0e-38 161.8 175 55.4
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.9e-37 159.8 161 55.9
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.5e-34 150.2 202 46.0
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 2.8e-33 146.0 92 73.9
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 3.1e-32 142.5 119 65.5
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 3.8e-30 135.6 94 80.9
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 7.2e-29 131.3 172 42.4
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 5.2e-27 125.2 66 87.9
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 1.3e-25 120.6 186 42.5
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 8.3e-25 117.9 180 43.3
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 1.1e-24 117.5 118 58.5
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 1.1e-24 117.5 118 58.5
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 1.4e-24 117.1 186 41.9
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.2e-23 114.0 105 62.9
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 1.6e-23 113.6 118 57.6
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 2.0e-23 113.2 118 57.6
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 2.3e-22 109.8 118 56.8
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.1e-21 107.5 163 39.3
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 5.2e-19 98.6 153 39.9
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 6.8e-19 98.2 153 39.9
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 9.8e-18 94.4 153 39.2
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 8.3e-17 91.3 145 40.7
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.0e-15 86.7 159 33.3
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.8e-11 73.6 122 38.5
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 2.0e-10 70.1 149 32.9
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 1.6e-07 60.5 61 42.6
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 4.6e-07 58.9 65 43.1
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.7e-06 57.0 54 44.4
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 2.3e-06 56.6 57 40.4
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.0e-06 56.2 54 44.4
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 3.9e-06 55.8 54 42.6
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 8.6e-06 54.7 54 42.6


User provided reference genes

Program Settings