Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g013980.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 6.4e-16 86.3 43 100.0
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 1.5e-09 65.1 42 73.8
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 5.8e-09 63.2 40 75.0
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 5.8e-09 63.2 40 75.0
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 5.8e-09 63.2 40 75.0
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 1.7e-08 61.6 40 72.5
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 2.2e-08 61.2 40 72.5
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 2.2e-08 61.2 40 72.5
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 2.2e-08 61.2 40 72.5
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 2.2e-08 61.2 40 72.5
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 2.2e-08 61.2 40 72.5
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 2.2e-08 61.2 40 72.5
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 2.9e-08 60.8 40 72.5
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 3.7e-08 60.5 40 72.5
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 3.7e-08 60.5 39 74.4
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 3.7e-08 60.5 39 74.4
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 4.9e-08 60.1 41 70.7
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 6.4e-08 59.7 40 70.0
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 6.4e-08 59.7 40 70.0
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 6.4e-08 59.7 40 70.0
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 6.4e-08 59.7 40 70.0
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 6.4e-08 59.7 40 70.0
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 8.4e-08 59.3 40 70.0
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 8.4e-08 59.3 40 70.0
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 8.4e-08 59.3 39 71.8
AUR62041380 Chenopodium quinoa HOM05D004229 ORTHO05D005468 8.4e-08 59.3 41 68.3
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 8.4e-08 59.3 40 70.0
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 8.4e-08 59.3 40 70.0
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 1.1e-07 58.9 40 70.0
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 1.1e-07 58.9 39 71.8
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 1.1e-07 58.9 40 70.0
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 1.1e-07 58.9 39 71.8
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 1.1e-07 58.9 40 70.0
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 1.1e-07 58.9 40 70.0
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 1.1e-07 58.9 40 70.0
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 1.1e-07 58.9 39 71.8
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 1.1e-07 58.9 39 71.8
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 1.1e-07 58.9 40 70.0
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 1.1e-07 58.9 39 71.8
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 1.4e-07 58.5 39 69.2
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 1.4e-07 58.5 39 69.2
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 1.9e-07 58.2 40 67.5
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 1.9e-07 58.2 40 70.0
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 1.9e-07 58.2 40 70.0
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 2.4e-07 57.8 40 67.5
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 2.4e-07 57.8 40 67.5
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 2.4e-07 57.8 40 67.5
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 2.4e-07 57.8 39 71.8
Peaxi162Scf00176g01310 Petunia axillaris HOM05D004229 ORTHO05D005468 2.4e-07 57.8 39 69.2
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 2.4e-07 57.8 39 69.2
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 2.4e-07 57.8 39 69.2
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 2.4e-07 57.8 39 69.2
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 2.4e-07 57.8 39 69.2
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 3.2e-07 57.4 39 69.2
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 3.2e-07 57.4 39 69.2
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 3.2e-07 57.4 39 69.2
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 3.2e-07 57.4 39 69.2
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 3.2e-07 57.4 39 71.8
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 3.2e-07 57.4 40 70.0
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.2e-07 57.4 40 70.0
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.2e-07 57.4 40 70.0
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.2e-07 57.4 40 70.0
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.2e-07 57.4 40 70.0
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.2e-07 57.4 40 70.0
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 3.2e-07 57.4 39 69.2
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 3.2e-07 57.4 39 69.2
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 3.2e-07 57.4 39 69.2
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 3.2e-07 57.4 38 71.1
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 3.2e-07 57.4 38 71.1
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 3.2e-07 57.4 39 69.2
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 3.2e-07 57.4 39 71.8
TPR.G10283 Trifolium pratense HOM05D004229 ORTHO05D005468 3.2e-07 57.4 39 69.2
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 3.2e-07 57.4 39 69.2
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 3.2e-07 57.4 39 69.2
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 4.1e-07 57.0 40 65.0
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 4.1e-07 57.0 40 67.5
Cpa.g.sc912.1 Carica papaya HOM05D004229 ORTHO05D005468 4.1e-07 57.0 40 67.5
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 4.1e-07 57.0 40 67.5
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 5.4e-07 56.6 39 66.7
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 5.4e-07 56.6 40 65.0
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 5.4e-07 56.6 39 69.2
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 7.1e-07 56.2 39 69.2
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 7.1e-07 56.2 38 68.4
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 7.1e-07 56.2 40 67.5
MBI09_g03016_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 9.2e-07 55.8 39 69.2
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 1.2e-06 55.5 39 69.2
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 1.2e-06 55.5 40 65.0
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 1.2e-06 55.5 39 69.2
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 1.2e-06 55.5 39 69.2
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 1.2e-06 55.5 39 69.2
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 1.2e-06 55.5 39 69.2
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 1.2e-06 55.5 39 69.2
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 1.2e-06 55.5 39 69.2
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 1.2e-06 55.5 39 69.2
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 1.2e-06 55.5 39 69.2
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 1.2e-06 55.5 40 67.5
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 1.2e-06 55.5 39 69.2
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 1.2e-06 55.5 39 66.7
Lalb_Chr21g0313711 Lupinus albus HOM05D004229 ORTHO05D005468 1.6e-06 55.1 39 66.7
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 2.1e-06 54.7 39 66.7
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 2.1e-06 54.7 39 66.7
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 2.1e-06 54.7 38 68.4
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 2.1e-06 54.7 40 65.0
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 2.7e-06 54.3 39 66.7
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 2.7e-06 54.3 38 68.4
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 3.5e-06 53.9 39 66.7
AUR62026961 Chenopodium quinoa HOM05D004229 ORTHO05D005468 3.5e-06 53.9 42 61.9
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 4.6e-06 53.5 40 62.5
SEGI_16046 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 7.8e-06 52.8 40 60.0


User provided reference genes

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