Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 5.7e-40 167.2 86 100.0
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 9.4e-27 123.2 87 73.6
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 9.4e-27 123.2 87 73.6
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 5.7e-24 114.0 87 70.1
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 6.3e-23 110.5 87 67.8
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 6.3e-23 110.5 87 67.8
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 1.8e-22 109.0 87 64.4
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 1.8e-22 109.0 87 67.8
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 9.1e-22 106.7 87 63.2
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 2.7e-21 105.1 87 60.9
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 4.5e-21 104.4 87 60.9
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 4.5e-21 104.4 87 60.9
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 1.0e-20 103.2 87 60.9
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 1.0e-20 103.2 87 57.5
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 1.7e-20 102.4 88 61.4
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 1.7e-20 102.4 87 62.1
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 1.7e-20 102.4 87 60.9
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 2.2e-20 102.1 87 59.8
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 2.9e-20 101.7 87 59.8
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.9e-20 101.7 87 59.8
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 3.8e-20 101.3 87 62.1
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 3.8e-20 101.3 88 60.2
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 5.0e-20 100.9 88 58.0
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 5.0e-20 100.9 88 59.1
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 6.5e-20 100.5 87 57.5
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 8.5e-20 100.1 87 59.8
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 8.5e-20 100.1 87 58.6
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 8.5e-20 100.1 87 58.6
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.5e-19 99.4 83 63.9
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 1.9e-19 99.0 87 62.1
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 2.5e-19 98.6 87 58.6
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 2.5e-19 98.6 87 58.6
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 2.5e-19 98.6 87 58.6
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.5e-19 98.6 87 57.5
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.5e-19 98.6 87 57.5
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 3.2e-19 98.2 87 58.6
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 3.2e-19 98.2 87 58.6
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 3.2e-19 98.2 88 59.1
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 5.5e-19 97.4 88 56.8
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 5.5e-19 97.4 88 56.8
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 5.5e-19 97.4 88 56.8
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 7.2e-19 97.1 88 56.8
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 7.2e-19 97.1 60 76.7
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 9.4e-19 96.7 88 58.0
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 9.4e-19 96.7 87 59.8
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 9.4e-19 96.7 88 56.8
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 1.2e-18 96.3 88 55.7
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.2e-18 96.3 86 59.3
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 1.2e-18 96.3 85 57.6
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 1.6e-18 95.9 88 55.7
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 1.6e-18 95.9 88 55.7
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 1.6e-18 95.9 88 55.7
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 2.1e-18 95.5 85 57.6
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 3.6e-18 94.7 87 55.2
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 3.6e-18 94.7 88 54.5
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 4.7e-18 94.4 88 55.7
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 4.7e-18 94.4 88 55.7
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 4.7e-18 94.4 88 58.0
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 4.7e-18 94.4 88 59.1
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 6.1e-18 94.0 87 56.3
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 6.1e-18 94.0 87 56.3
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 8.0e-18 93.6 87 52.9
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 8.0e-18 93.6 89 59.6
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 1.0e-17 93.2 88 53.4
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 1.0e-17 93.2 89 57.3
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 1.0e-17 93.2 87 55.2
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 1.0e-17 93.2 88 60.2
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 1.0e-17 93.2 87 52.9
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 1.8e-17 92.4 87 54.0
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 1.8e-17 92.4 89 58.4
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 1.8e-17 92.4 88 55.7
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 1.8e-17 92.4 87 54.0
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 2.3e-17 92.0 88 55.7
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 2.3e-17 92.0 87 57.5
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 3.0e-17 91.7 89 59.6
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 4.0e-17 91.3 89 58.4
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 4.0e-17 91.3 87 54.0
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 4.0e-17 91.3 89 58.4
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 5.2e-17 90.9 88 55.7
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 8.8e-17 90.1 89 53.9
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 2.6e-16 88.6 87 57.5
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 2.6e-16 88.6 87 58.6
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 5.7e-16 87.4 88 56.8
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 9.8e-16 86.7 89 52.8
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 1.3e-15 86.3 89 52.8
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 2.2e-15 85.5 86 55.8
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 2.8e-15 85.1 89 55.1
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 3.7e-15 84.7 89 52.8
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 6.3e-15 84.0 88 54.5
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 8.3e-15 83.6 86 55.8
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 2.4e-14 82.0 86 53.5
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 3.1e-14 81.6 86 53.5
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 4.1e-14 81.3 72 54.2
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 5.4e-14 80.9 88 53.4
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 5.0e-12 74.3 70 54.3
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 1.5e-11 72.8 87 44.8
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 1.9e-11 72.4 87 41.4
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 7.2e-11 70.5 51 66.7
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 1.6e-10 69.3 87 43.7
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.4e-09 66.2 61 59.0


User provided reference genes

Program Settings