Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 5.1e-126 454.5 247 100.0
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 4.6e-119 431.4 242 97.9
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 7.4e-117 424.1 242 96.3
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 5.5e-112 407.9 242 92.6
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.0e-109 399.4 242 86.8
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.6e-109 399.1 242 90.1
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 6.3e-108 394.4 242 88.4
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 1.2e-103 380.2 242 86.0
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.2e-102 374.8 242 85.1
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 5.7e-101 371.3 242 83.5
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.3e-100 370.2 242 83.1
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 3.7e-100 368.6 243 84.0
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 3.7e-100 368.6 242 79.8
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 6.1e-95 351.3 204 88.2
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 8.0e-95 350.9 242 81.0
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.0e-94 350.5 242 77.7
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 3.0e-94 349.0 242 80.2
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.2e-93 347.1 206 85.4
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.2e-93 347.1 242 78.9
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 2.6e-93 345.9 241 79.7
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 2.6e-93 345.9 244 75.0
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.6e-93 345.9 242 79.3
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 4.4e-93 345.1 242 74.4
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 7.5e-93 344.4 241 74.3
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 9.8e-93 344.0 242 78.5
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.3e-92 343.6 242 74.0
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 2.2e-92 342.8 244 72.5
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.1e-91 340.5 242 77.7
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.4e-91 340.1 226 83.6
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 1.4e-91 340.1 243 78.2
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 1.8e-91 339.7 237 74.7
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.4e-91 339.3 242 77.7
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 3.1e-91 339.0 242 71.9
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 5.4e-91 338.2 209 81.3
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 5.4e-91 338.2 241 78.4
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 7.0e-91 337.8 239 73.6
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.2e-90 337.0 242 77.3
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.2e-90 337.0 242 77.3
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.5e-90 335.5 243 72.0
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 7.7e-90 334.3 242 72.7
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 7.7e-90 334.3 243 72.0
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.7e-90 334.3 243 71.6
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 7.7e-90 334.3 241 76.8
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.0e-89 334.0 241 77.6
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.3e-89 333.6 242 76.4
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.7e-89 333.2 245 69.8
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 2.2e-89 332.8 242 72.3
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 2.2e-89 332.8 242 77.7
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.9e-89 332.4 243 71.6
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 2.9e-89 332.4 242 74.4
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 3.8e-89 332.0 243 74.9
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 3.8e-89 332.0 242 76.4
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 5.0e-89 331.6 241 78.0
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 5.0e-89 331.6 241 71.8
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 6.5e-89 331.3 242 76.4
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 8.5e-89 330.9 242 75.2
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.1e-88 330.5 241 76.3
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.5e-88 330.1 243 71.2
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.5e-88 330.1 241 74.3
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 2.5e-88 329.3 206 81.6
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 2.5e-88 329.3 252 71.8
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 3.2e-88 328.9 199 84.4
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 5.5e-88 328.2 242 70.2
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 5.5e-88 328.2 241 75.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 5.5e-88 328.2 242 76.9
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 7.2e-88 327.8 239 71.5
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 9.4e-88 327.4 226 81.9
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 2.1e-87 326.2 242 74.8
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 2.1e-87 326.2 242 74.8
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.1e-87 326.2 242 74.4
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 2.7e-87 325.9 242 74.8
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.7e-87 325.9 242 76.0
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 2.7e-87 325.9 242 74.8
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 3.6e-87 325.5 242 76.0
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 8.0e-87 324.3 243 74.5
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 8.0e-87 324.3 242 74.4
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.8e-86 323.2 242 74.4
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.3e-86 322.8 243 74.5
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 2.3e-86 322.8 249 69.1
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.0e-86 322.4 241 71.4
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 3.0e-86 322.4 242 76.0
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 6.8e-86 321.2 241 72.2
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 8.8e-86 320.9 199 82.4
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 1.5e-85 320.1 208 79.8
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.6e-85 319.3 206 80.1
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.7e-84 316.6 241 70.1
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 2.2e-84 316.2 242 74.0
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.9e-84 315.1 204 79.9
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 6.3e-84 314.7 242 71.5
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.1e-83 313.9 242 72.7
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.4e-83 313.5 207 77.3
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.1e-83 312.4 244 68.9
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 4.1e-83 312.0 243 67.9
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 7.0e-83 311.2 202 80.2
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 7.0e-83 311.2 243 72.0
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 9.1e-83 310.8 210 84.8
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.2e-82 310.5 243 71.2
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 2.0e-82 309.7 244 68.4
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 3.5e-82 308.9 245 71.4
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 3.5e-82 308.9 225 74.2
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 5.9e-82 308.1 243 68.7
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 7.7e-82 307.8 243 68.7
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 7.7e-82 307.8 244 67.6
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 7.7e-82 307.8 209 76.1
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.0e-81 307.4 243 70.4
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.0e-81 307.4 242 69.8
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 3.8e-81 305.4 244 67.6
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 3.8e-81 305.4 193 80.8
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 1.1e-80 303.9 204 76.0
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 2.5e-80 302.8 242 69.0
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 2.5e-80 302.8 244 67.6
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 1.6e-79 300.1 244 66.0
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.6e-79 300.1 226 71.2
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 6.1e-79 298.1 215 72.1
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 6.1e-79 298.1 215 72.1
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 6.1e-79 298.1 242 67.8
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 1.4e-78 297.0 205 76.6
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 3.0e-78 295.8 215 71.6
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 3.0e-78 295.8 215 71.6
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 5.4e-75 285.0 183 78.7
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 1.2e-71 273.9 209 67.0
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 3.1e-70 269.2 195 71.3
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 8.9e-70 267.7 226 62.8
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 7.5e-69 264.6 176 73.9
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.1e-62 244.2 196 63.3
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 2.2e-60 236.5 157 75.8
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.1e-59 234.2 213 62.4
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 2.5e-56 223.0 187 64.2
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 3.1e-54 216.1 213 56.8
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 5.2e-54 215.3 170 70.0
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 3.3e-48 196.1 133 73.7
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.2e-45 187.6 242 50.4
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 9.9e-45 184.5 111 78.4
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 6.6e-41 171.8 176 52.8
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 7.6e-37 158.3 173 50.3
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 1.6e-34 150.6 105 69.5
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 2.0e-29 133.7 188 41.5
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.6e-29 133.3 90 90.0
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 4.2e-27 125.9 86 68.6
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.2e-26 124.4 98 66.3
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.1e-19 101.3 90 63.3
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.5e-16 90.9 189 30.7
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 5.3e-14 82.4 54 74.1
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 8.4e-12 75.1 188 29.3
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 2.3e-09 67.0 80 52.5
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 1.3e-07 61.2 83 44.6
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.4e-06 57.0 63 54.0


User provided reference genes

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