Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.6e-202 709.1 343 100.0
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 2.1e-178 629.0 343 89.2
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 5.4e-166 587.8 355 82.5
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 2.7e-157 558.9 350 79.4
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.2e-154 550.1 332 82.2
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 4.6e-149 531.6 255 99.6
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 4.8e-130 468.4 287 75.6
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 6.0e-125 451.4 287 71.4
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.8e-124 449.9 287 71.1
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 2.5e-123 446.0 292 70.9
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 3.3e-123 445.7 289 69.9
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.3e-123 445.7 285 72.3
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 1.6e-122 443.4 332 65.7
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.7e-122 442.2 285 71.6
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 4.8e-122 441.8 285 71.9
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 6.2e-122 441.4 340 63.5
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 1.1e-121 440.7 287 71.4
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 2.6e-120 436.0 286 69.9
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 5.8e-120 434.9 287 69.0
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 9.9e-120 434.1 284 70.1
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 9.9e-120 434.1 286 71.0
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 9.9e-120 434.1 285 71.9
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 1.7e-119 433.3 286 69.6
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 1.7e-119 433.3 309 66.0
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 6.4e-119 431.4 294 69.0
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 1.4e-118 430.3 335 61.5
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.5e-118 429.5 287 68.3
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 4.2e-118 428.7 288 68.4
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 5.5e-118 428.3 323 64.7
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 7.1e-118 427.9 288 68.4
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 7.1e-118 427.9 287 67.6
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 7.1e-118 427.9 301 68.1
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 1.6e-117 426.8 287 67.6
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 2.7e-117 426.0 326 62.9
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 4.6e-117 425.2 288 68.4
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 1.3e-116 423.7 284 68.7
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 3.0e-116 422.5 312 64.4
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 1.1e-115 420.6 341 62.5
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 1.9e-115 419.9 286 69.6
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 7.4e-115 417.9 311 64.6
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.3e-114 417.2 257 73.5
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.3e-114 417.2 305 67.5
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 2.0e-112 409.8 288 66.3
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.3e-111 407.1 284 67.3
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.3e-111 407.1 285 67.0
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 4.9e-111 405.2 288 64.9
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 8.4e-111 404.4 325 59.7
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 8.4e-111 404.4 283 67.5
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 1.1e-110 404.1 283 67.5
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.4e-110 403.7 316 61.7
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 3.2e-110 402.5 288 65.6
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 7.1e-110 401.4 339 57.8
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 3.5e-109 399.1 249 73.1
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 3.5e-109 399.1 285 66.0
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 1.8e-108 396.7 284 65.8
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 8.7e-108 394.4 252 70.6
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 1.9e-107 393.3 282 66.7
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 3.3e-107 392.5 289 64.7
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 9.7e-107 391.0 250 73.2
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.3e-106 390.6 337 55.8
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 2.2e-106 389.8 284 62.3
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 8.2e-106 387.9 284 63.0
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 5.3e-105 385.2 287 63.8
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 5.3e-105 385.2 336 55.7
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.2e-104 384.0 284 61.3
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.2e-104 384.0 262 66.8
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 3.4e-104 382.5 284 61.3
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 1.7e-103 380.2 337 54.3
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 1.7e-103 380.2 284 60.9
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 2.2e-103 379.8 284 60.9
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 2.9e-103 379.4 260 64.2
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 2.9e-103 379.4 219 76.3
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 3.8e-103 379.0 284 60.9
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 8.5e-103 377.9 284 60.6
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 1.4e-102 377.1 284 60.9
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 3.2e-102 375.9 284 60.2
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 3.2e-102 375.9 330 58.2
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 4.6e-101 372.1 284 59.2
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.0e-100 370.9 337 54.3
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 1.4e-100 370.5 284 59.5
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 9.7e-99 364.4 249 68.3
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.4e-97 360.5 249 66.3
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 5.3e-97 358.6 288 59.4
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 8.8e-92 341.3 258 60.5
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 8.8e-92 341.3 264 59.5
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 8.2e-90 334.7 283 56.2
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 7.0e-89 331.6 288 56.2
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.0e-88 330.1 288 56.2
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 4.5e-88 328.9 286 58.0
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 3.8e-87 325.9 225 69.8
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 3.2e-86 322.8 284 53.9
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.7e-85 319.7 203 72.4
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.3e-82 310.8 210 67.6
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.3e-82 310.8 189 74.1
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 4.1e-81 305.8 285 50.2
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.6e-80 303.9 283 53.4
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 3.5e-80 302.8 285 51.6
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 7.2e-78 295.0 285 53.3
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.6e-77 293.9 160 85.0
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 2.7e-77 293.1 279 48.4
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 1.8e-76 290.4 216 61.6
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.5e-75 287.3 189 67.2
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 7.5e-75 285.0 256 50.8
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 3.7e-74 282.7 286 46.9
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 9.1e-73 278.1 161 76.4
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.1e-70 271.2 209 71.8
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.2e-69 267.7 297 48.1
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 1.2e-64 251.1 154 72.1
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.5e-59 231.9 183 60.7
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 1.7e-58 230.7 239 52.3
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 6.3e-58 228.8 244 50.8
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 4.1e-57 226.1 166 65.1
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.4e-57 225.7 243 49.8
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 4.5e-56 222.6 148 68.2
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 9.5e-46 188.3 232 47.4
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 2.0e-43 180.6 216 37.5
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.2e-42 177.2 195 49.2
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 1.9e-41 174.1 127 60.6
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 2.4e-41 173.7 114 67.5
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 2.3e-39 167.2 148 55.4
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 2.2e-34 150.6 277 34.7
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 1.4e-33 147.9 127 56.7
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 1.4e-33 147.9 132 55.3
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.3e-31 141.4 100 66.0
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 1.9e-30 137.5 100 65.0
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 4.0e-28 129.8 75 74.7
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 9.9e-27 125.2 100 64.0
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 3.6e-21 106.7 67 71.6
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 6.9e-20 102.4 76 57.9
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 3.8e-18 96.7 155 40.6
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.7e-16 90.5 70 64.3
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 8.7e-15 85.5 85 52.9
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 2.0e-11 74.3 71 60.6


User provided reference genes

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