Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 0.0e+00 1234.6 614 100.0
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 0.0e+00 1140.9 570 99.1
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 0.0e+00 1080.5 570 93.7
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 1.8e-297 1025.4 542 93.2
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.2e-288 996.1 542 90.8
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 6.9e-273 943.7 571 80.4
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 1.2e-272 943.0 578 80.1
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 1.9e-270 935.6 571 80.2
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 2.5e-270 935.3 571 80.6
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 1.1e-267 926.4 571 80.0
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 4.8e-266 921.0 571 79.3
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 9.1e-265 916.8 571 79.3
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 2.0e-264 915.6 570 78.6
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 2.6e-264 915.2 573 78.4
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 2.1e-261 905.6 572 77.4
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 1.0e-260 903.3 570 76.7
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 3.9e-260 901.4 571 77.6
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 9.7e-259 896.7 570 76.5
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.8e-258 895.2 571 77.6
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 4.8e-258 894.4 571 76.7
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 8.2e-258 893.6 570 76.5
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 1.8e-257 892.5 573 76.8
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.8e-257 892.5 573 76.4
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 1.8e-257 892.5 586 75.9
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.4e-257 892.1 571 78.1
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 7.0e-257 890.6 575 75.7
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.9e-254 882.5 574 74.7
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 5.5e-254 880.9 570 75.4
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 9.4e-254 880.2 607 73.3
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 2.7e-253 878.6 570 74.4
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.7e-253 878.6 571 77.4
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 4.7e-253 877.9 571 74.1
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 8.0e-253 877.1 571 76.0
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.4e-252 876.3 571 76.9
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 3.9e-252 874.8 571 76.2
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 3.9e-252 874.8 571 76.0
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 3.9e-252 874.8 571 77.1
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.0e-251 872.5 571 76.0
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 4.4e-251 871.3 553 77.8
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 8.2e-250 867.1 572 74.8
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 8.2e-250 867.1 571 75.7
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 2.4e-249 865.5 582 72.5
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 2.4e-249 865.5 571 76.2
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 3.1e-249 865.1 581 72.6
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 3.1e-249 865.1 594 72.9
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 7.0e-249 864.0 571 75.0
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 7.0e-249 864.0 571 74.4
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 1.2e-248 863.2 582 72.2
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 1.2e-248 863.2 581 72.8
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 1.6e-248 862.8 570 72.3
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 1.6e-248 862.8 570 71.8
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 1.6e-248 862.8 571 73.4
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 1.7e-247 859.4 598 71.6
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 2.9e-247 858.6 581 71.6
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 3.8e-247 858.2 575 73.4
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 3.8e-247 858.2 581 72.8
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 5.0e-247 857.8 572 73.6
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 8.5e-247 857.1 571 72.2
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 2.5e-246 855.5 582 73.4
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 4.2e-246 854.7 581 72.1
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 1.2e-245 853.2 571 72.2
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 4.7e-245 851.3 581 71.8
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 8.0e-245 850.5 571 71.8
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 8.0e-245 850.5 571 71.8
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.8e-244 849.4 574 73.3
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 2.3e-244 849.0 581 71.4
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 1.2e-243 846.7 581 71.4
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 1.2e-243 846.7 579 72.7
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 3.3e-243 845.1 551 74.8
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 4.4e-243 844.7 573 72.6
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 5.7e-243 844.3 570 72.3
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.2e-242 842.4 582 71.5
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 2.2e-242 842.4 570 72.1
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 3.7e-242 841.6 588 70.6
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 8.2e-242 840.5 577 70.5
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 8.2e-242 840.5 581 71.4
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 7.0e-241 837.4 581 71.1
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 2.9e-239 832.0 584 69.5
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.9e-238 829.3 584 69.5
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 5.5e-238 827.8 584 69.2
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 5.5e-238 827.8 577 71.2
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 7.2e-238 827.4 584 69.3
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 9.4e-238 827.0 582 69.6
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 9.8e-235 817.0 708 61.9
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 1.7e-234 816.2 608 68.1
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.1e-233 813.5 606 70.1
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 1.8e-233 812.8 603 68.0
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 9.1e-233 810.4 572 71.5
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 2.9e-231 805.4 570 68.8
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 3.8e-231 805.1 569 70.7
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 1.6e-229 799.7 571 70.4
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 2.1e-229 799.3 588 69.6
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 2.2e-226 789.3 514 77.2
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 9.2e-225 783.9 582 68.6
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 4.5e-224 781.6 584 68.0
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 1.0e-223 780.4 603 65.3
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 3.3e-222 775.4 518 75.1
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 8.0e-221 770.8 580 66.9
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 5.2e-220 768.1 575 67.1
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 5.4e-217 758.1 584 67.6
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 1.3e-215 753.4 501 73.5
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 2.3e-212 742.7 487 75.8
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 8.9e-212 740.7 580 64.3
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 8.3e-210 734.2 577 65.5
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 1.4e-209 733.4 574 62.9
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 3.9e-207 725.3 577 64.6
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 6.6e-207 724.5 504 71.4
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 2.8e-205 719.2 789 52.9
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 3.6e-205 718.8 510 69.6
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 1.8e-204 716.5 554 65.0
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 1.1e-201 707.2 582 64.8
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 9.2e-201 704.1 570 63.2
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 2.7e-200 702.6 460 75.2
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 4.6e-200 701.8 503 70.0
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 4.0e-196 688.7 581 61.6
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 3.0e-191 672.5 516 65.3
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.1e-185 654.1 420 76.2
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 2.5e-182 642.9 592 56.2
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.3e-181 640.6 425 74.8
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 8.1e-173 611.3 589 54.0
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 2.1e-168 596.7 557 58.5
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 2.7e-160 569.7 498 59.0
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 9.7e-158 561.2 565 50.3
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.0e-155 553.5 624 51.4
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.1e-150 537.7 762 44.1
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.2e-147 527.7 385 69.4
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 4.7e-144 515.8 594 46.6
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 2.6e-142 510.0 589 45.8
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.1e-140 504.6 376 68.1
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 2.2e-138 496.9 382 66.8
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 7.0e-132 475.3 542 51.3
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.2e-129 466.5 331 71.0
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 2.4e-116 423.7 318 69.5
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 2.5e-113 413.7 268 75.0
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.7e-107 393.7 257 75.9
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 7.3e-105 385.6 415 50.6
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 9.5e-105 385.2 288 67.7
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 8.3e-101 372.1 207 88.4
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 4.4e-94 349.7 291 63.6
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.4e-92 344.0 446 45.5
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.5e-89 334.0 171 94.2
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.8e-88 330.5 307 59.0
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.1e-87 327.0 176 90.3
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.7e-85 321.2 190 84.2
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 8.6e-82 308.9 190 76.8
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.1e-72 277.7 176 75.6
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.0e-70 271.2 153 85.0
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 2.1e-67 261.2 154 80.5
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 2.1e-67 261.2 157 79.0
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.6e-64 250.4 252 53.6
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 9.6e-57 225.7 178 60.1
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 2.1e-56 224.6 253 49.0
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 9.3e-52 209.1 179 56.4
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 3.5e-51 207.2 463 33.3
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 6.7e-50 203.0 179 55.9
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.3e-49 200.7 130 76.2
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.1e-47 195.7 120 75.8
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.5e-44 184.5 119 68.1
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 5.9e-38 163.3 93 79.6
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.0e-37 162.5 184 49.5
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 2.7e-35 154.5 168 53.6
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 1.0e-34 152.5 146 55.5
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 7.4e-33 146.4 97 68.0
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 1.3e-32 145.6 97 66.0
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 1.3e-32 145.6 240 42.5
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 2.2e-32 144.8 97 67.0
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 5.3e-31 140.2 97 66.0
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 1.2e-30 139.0 97 64.9
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 4.4e-25 120.6 85 65.9
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 7.4e-25 119.8 149 46.3
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 4.8e-24 117.1 66 80.3
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.8e-23 115.2 127 50.4
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 4.5e-22 110.5 71 74.6
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 5.5e-20 103.6 103 57.3
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 6.7e-18 96.7 119 44.5
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 3.7e-16 90.9 88 56.8
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 2.7e-14 84.7 91 49.5
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 1.6e-11 75.5 61 54.1
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.1e-11 75.1 52 63.5
Lsat_1_v5_gn_4_30320 Lactuca sativa HOM05D003829 ORTHO05D015515 2.3e-10 71.6 38 84.2
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 6.3e-08 63.5 44 68.2
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 6.3e-08 63.5 44 68.2
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 2.4e-07 61.6 48 66.7
Nitab4.5_0000138g0110 Nicotiana tabacum HOM05D003829 ORTHO05D283026 4.1e-07 60.8 31 90.3
Lsat_1_v5_gn_1_100681 Lactuca sativa HOM05D003829 ORTHO05D228871 1.6e-06 58.9 34 79.4


User provided reference genes

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