Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.6e-73 279.3 136 100.0
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-72 276.6 136 99.3
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-72 276.6 136 99.3
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-72 276.6 136 99.3
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-72 276.6 136 99.3
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-72 276.6 136 99.3
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 3.0e-67 258.5 135 92.6
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 6.6e-67 257.3 135 91.9
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 8.6e-67 256.9 135 91.9
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 8.6e-67 256.9 129 97.7
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 1.9e-66 255.8 135 91.1
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 5.6e-66 254.2 135 90.4
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 5.6e-66 254.2 135 90.4
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.2e-65 253.1 135 90.4
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 2.4e-64 248.8 128 93.8
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 8.9e-64 246.9 135 88.1
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 4.4e-63 244.6 126 92.9
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 1.3e-62 243.0 125 92.8
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 2.9e-62 241.9 128 91.4
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 2.9e-62 241.9 125 92.0
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 2.9e-62 241.9 125 92.0
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 3.8e-62 241.5 125 92.0
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 3.8e-62 241.5 126 92.1
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 3.8e-62 241.5 125 92.0
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 4.9e-62 241.1 125 91.2
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 4.9e-62 241.1 124 92.7
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 4.9e-62 241.1 124 92.7
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 8.4e-62 240.4 128 91.4
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.1e-61 240.0 126 92.1
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 2.4e-61 238.8 128 90.6
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 9.2e-61 236.9 128 89.1
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 9.2e-61 236.9 128 89.1
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 1.6e-60 236.1 126 91.3
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 3.5e-60 235.0 126 90.5
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 3.5e-60 235.0 126 90.5
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 3.5e-60 235.0 126 90.5
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 3.5e-60 235.0 126 90.5
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 3.5e-60 235.0 126 90.5
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 3.5e-60 235.0 126 90.5
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 3.5e-60 235.0 126 90.5
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 3.5e-60 235.0 126 90.5
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 1.0e-59 233.4 128 87.5
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.7e-59 232.6 125 90.4
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 3.0e-59 231.9 127 90.6
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 3.3e-58 228.4 121 90.9
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 1.4e-56 223.0 117 89.7
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 6.9e-56 220.7 117 90.6
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 6.9e-56 220.7 117 90.6
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 6.9e-56 220.7 117 90.6
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 6.9e-56 220.7 117 90.6
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 6.9e-56 220.7 117 90.6
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 6.9e-56 220.7 117 90.6
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 6.9e-56 220.7 117 90.6
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 6.9e-56 220.7 117 90.6
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 6.9e-56 220.7 117 90.6
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 6.9e-56 220.7 117 90.6
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 2.0e-55 219.2 122 86.9
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 3.4e-55 218.4 115 90.4
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 4.6e-52 208.0 123 82.9
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 1.7e-51 206.1 117 86.3
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 1.8e-48 196.1 110 86.4
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 5.8e-47 191.0 128 75.8
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 7.6e-47 190.7 118 78.8
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 2.2e-46 189.1 102 92.2
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 1.9e-45 186.0 97 92.8
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 9.3e-45 183.7 96 93.8
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 1.0e-43 180.3 115 76.5
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.3e-43 179.9 103 85.4
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.3e-43 179.9 103 85.4
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 1.3e-43 179.9 103 85.4
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 6.7e-43 177.6 128 71.9
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 1.1e-42 176.8 120 77.5
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 2.5e-42 175.6 97 88.7
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.7e-41 171.8 91 89.0
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.7e-41 171.8 126 69.8
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.7e-41 171.8 126 69.8
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.7e-41 171.8 91 89.0
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 2.4e-40 169.1 96 86.5
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 6.9e-40 167.5 96 85.4
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 6.9e-40 167.5 96 85.4
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 1.1e-34 150.2 135 59.3
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 4.5e-31 138.3 75 90.7
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 3.8e-30 135.2 67 97.0
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 6.5e-30 134.4 74 83.8
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 9.3e-29 130.6 74 82.4
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 1.2e-28 130.2 105 64.8
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.3e-26 121.7 80 77.5
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 1.3e-25 120.2 127 43.3
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 1.1e-24 117.1 73 82.2
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 6.9e-24 114.4 60 88.3
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-23 113.6 131 51.9
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 2.7e-20 102.4 55 92.7
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.6e-20 102.1 58 87.9
BraSC48t46285Z Brassica rapa HOM05D004291 ORTHO05D005620 7.4e-18 94.4 46 89.1
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 3.7e-17 92.0 55 83.6
BolSC28t60389H Brassica oleracea HOM05D004291 ORTHO05D005620 4.8e-17 91.7 44 90.9
BolSC28t60408H Brassica oleracea HOM05D004291 ORTHO05D005620 4.8e-17 91.7 44 90.9
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 1.8e-16 89.7 54 77.8
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 1.8e-16 89.7 42 100.0
Sabra01G0004500 Salix brachista HOM05D000521 ORTHO05D006286 5.3e-16 88.2 55 78.2
ClCG06G009310 Citrullus lanatus HOM05D004291 ORTHO05D005620 4.5e-15 85.1 46 82.6
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.8e-14 82.0 70 62.9
Peaxi162Scf00187g00115 Petunia axillaris HOM05D004291 ORTHO05D005620 6.5e-14 81.3 42 92.9
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 9.4e-13 77.4 48 85.4
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 2.1e-12 76.3 38 94.7
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 4.7e-12 75.1 52 76.9
SMO053G0010 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 4.7e-12 75.1 110 44.5
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 1.5e-10 70.1 67 55.2
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 2.6e-10 69.3 108 33.3
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 2.8e-09 65.9 58 56.9
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 2.4e-08 62.8 57 57.9
Sc08g0004800 Simmondsia chinensis HOM05D004291 ORTHO05D005620 2.0e-07 59.7 46 67.4
Mapoly0007s0023 Marchantia polymorpha HOM05D004291 ORTHO05D005620 2.6e-07 59.3 49 61.2
PGSC0003DMG400023928 Solanum tuberosum HOM05D004291 ORTHO05D005620 1.3e-06 57.0 24 100.0
CAN.G1021.16 Capsicum annuum HOM05D038713 ORTHO05D033974 8.5e-06 54.3 39 61.5
CAN.G261.11 Capsicum annuum HOM05D038713 ORTHO05D033974 8.5e-06 54.3 39 61.5


User provided reference genes

Program Settings