Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.3e-74 281.6 136 100.0
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.3e-74 281.6 136 100.0
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.3e-74 281.6 136 100.0
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.3e-74 281.6 136 100.0
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.3e-74 281.6 136 100.0
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.4e-72 276.2 136 99.3
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 2.7e-68 261.9 135 92.6
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 2.7e-68 261.9 129 98.4
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 1.7e-67 259.2 135 91.1
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 1.7e-67 259.2 135 91.1
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 3.9e-67 258.1 135 91.1
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 6.6e-67 257.3 135 92.6
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 1.5e-66 256.1 135 91.9
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 4.3e-66 254.6 135 91.1
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 7.3e-66 253.8 128 94.5
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 2.0e-63 245.7 135 88.1
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 2.6e-63 245.4 128 92.2
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 7.6e-63 243.8 128 91.4
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 7.6e-63 243.8 126 92.9
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 2.9e-62 241.9 128 89.8
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 2.9e-62 241.9 125 92.8
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 6.4e-62 240.7 128 91.4
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 6.4e-62 240.7 125 92.0
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 6.4e-62 240.7 125 92.0
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 6.4e-62 240.7 126 92.1
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 8.4e-62 240.4 126 91.3
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 8.4e-62 240.4 126 91.3
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 8.4e-62 240.4 126 91.3
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 8.4e-62 240.4 126 91.3
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 8.4e-62 240.4 126 91.3
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 8.4e-62 240.4 126 91.3
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 8.4e-62 240.4 126 91.3
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 8.4e-62 240.4 126 91.3
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 8.4e-62 240.4 125 92.0
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 8.4e-62 240.4 124 92.7
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 8.4e-62 240.4 124 92.7
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 8.4e-62 240.4 125 92.0
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 1.1e-61 240.0 125 91.2
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.9e-61 239.2 126 92.1
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 7.1e-61 237.3 127 91.3
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 2.1e-60 235.7 128 89.1
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 2.7e-60 235.3 126 91.3
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 2.3e-59 232.3 128 87.5
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 3.9e-59 231.5 125 90.4
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 7.3e-58 227.3 121 90.9
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 6.2e-57 224.2 122 87.7
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 2.4e-56 222.2 117 89.7
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-55 219.9 117 90.6
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-55 219.9 117 90.6
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-55 219.9 117 90.6
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-55 219.9 117 90.6
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-55 219.9 117 90.6
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-55 219.9 117 90.6
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-55 219.9 117 90.6
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-55 219.9 117 90.6
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-55 219.9 117 90.6
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-55 219.9 117 90.6
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 5.8e-55 217.6 115 90.4
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 5.4e-53 211.1 117 87.2
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 7.8e-52 207.2 123 82.9
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 5.6e-50 201.1 110 87.3
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 1.8e-48 196.1 128 76.6
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 2.4e-48 195.7 118 79.7
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 5.3e-48 194.5 102 93.1
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 3.2e-45 185.3 103 86.4
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 3.2e-45 185.3 103 86.4
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 3.2e-45 185.3 103 86.4
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 3.2e-45 185.3 115 77.4
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 4.2e-45 184.9 97 92.8
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 2.1e-44 182.6 96 93.8
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 1.5e-42 176.4 128 71.9
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 2.5e-42 175.6 120 77.5
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 5.6e-42 174.5 97 88.7
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 7.4e-42 174.1 96 87.5
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 6.2e-41 171.0 91 89.0
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 6.2e-41 171.0 91 89.0
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 8.1e-41 170.6 126 69.8
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 8.1e-41 170.6 126 69.8
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-39 166.4 96 85.4
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-39 166.4 96 85.4
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 1.1e-34 150.2 135 59.3
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 1.4e-32 143.3 75 92.0
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 2.9e-30 135.6 105 65.7
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 2.9e-30 135.6 74 83.8
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 2.9e-30 135.6 67 97.0
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 1.4e-29 133.3 74 83.8
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 4.3e-26 121.7 127 43.3
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.3e-26 121.7 80 77.5
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 8.2e-25 117.5 73 82.2
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 6.9e-24 114.4 60 88.3
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-23 113.6 131 51.9
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 2.7e-20 102.4 55 92.7
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.6e-20 102.1 58 87.9
BraSC48t46285Z Brassica rapa HOM05D004291 ORTHO05D005620 7.4e-18 94.4 46 89.1
BolSC28t60389H Brassica oleracea HOM05D004291 ORTHO05D005620 3.7e-17 92.0 44 90.9
BolSC28t60408H Brassica oleracea HOM05D004291 ORTHO05D005620 3.7e-17 92.0 44 90.9
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 3.7e-17 92.0 55 83.6
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 1.8e-16 89.7 42 100.0
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 4.1e-16 88.6 54 77.8
Sabra01G0004500 Salix brachista HOM05D000521 ORTHO05D006286 5.3e-16 88.2 55 78.2
Peaxi162Scf00187g00115 Petunia axillaris HOM05D004291 ORTHO05D005620 2.0e-15 86.3 42 95.2
ClCG06G009310 Citrullus lanatus HOM05D004291 ORTHO05D005620 4.5e-15 85.1 46 82.6
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.8e-14 82.0 70 62.9
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 9.4e-13 77.4 48 85.4
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 2.1e-12 76.3 38 94.7
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 3.6e-12 75.5 52 76.9
SMO053G0010 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 1.0e-11 73.9 110 44.5
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 5.1e-11 71.6 74 55.4
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 4.4e-10 68.6 108 33.3
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 2.2e-09 66.2 58 56.9
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 1.8e-08 63.2 57 57.9
Sc08g0004800 Simmondsia chinensis HOM05D004291 ORTHO05D005620 1.5e-07 60.1 46 67.4
CAN.G1021.16 Capsicum annuum HOM05D038713 ORTHO05D033974 2.6e-07 59.3 39 64.1
CAN.G261.11 Capsicum annuum HOM05D038713 ORTHO05D033974 2.6e-07 59.3 39 64.1
Mapoly0007s0023 Marchantia polymorpha HOM05D004291 ORTHO05D005620 2.6e-07 59.3 49 61.2
PGSC0003DMG400023928 Solanum tuberosum HOM05D004291 ORTHO05D005620 1.3e-06 57.0 24 100.0


User provided reference genes

Program Settings