Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500026.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 1.7e-31 138.7 69 100.0
Solyc00g500072.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 1.7e-31 138.7 69 100.0
Peaxi162Scf00527g00037 Petunia axillaris HOM05D000580 ORTHO05D006815 4.3e-30 134.0 69 97.1
Psat0s7142g0160 Pisum sativum HOM05D000580 ORTHO05D001785 3.3e-22 107.8 56 91.1
Psat6g181560 Pisum sativum HOM05D000580 ORTHO05D001785 9.6e-22 106.3 56 89.3
Peaxi162Scf00299g10016 Petunia axillaris HOM05D000580 ORTHO05D006815 1.6e-21 105.5 51 100.0
Lalb_Chr10g0093221 Lupinus albus HOM05D000580 ORTHO05D006815 8.1e-21 103.2 51 98.0
Lalb_Chr25g0283341 Lupinus albus HOM05D000580 ORTHO05D006815 8.1e-21 103.2 51 98.0
PGR111G0073 Punica granatum HOM05D000580 ORTHO05D006815 8.1e-21 103.2 51 98.0
CAN.G219.32 Capsicum annuum HOM05D000580 ORTHO05D006815 1.1e-20 102.8 51 96.1
HanXRQChr10g0299321 Helianthus annuus HOM05D000580 ORTHO05D001785 1.1e-20 102.8 53 92.5
HanXRQChr11g0326921 Helianthus annuus HOM05D000580 ORTHO05D001785 1.1e-20 102.8 53 92.5
Medtr4g051375 Medicago truncatula HOM05D000580 ORTHO05D006815 1.1e-20 102.8 53 92.5
CSS0026029 Camellia sinensis var. sinensis HOM05D000580 ORTHO05D006815 1.8e-20 102.1 51 96.1
CAN.G131.5 Capsicum annuum HOM05D000580 ORTHO05D006815 2.4e-20 101.7 51 94.1
CAN.G1513.10 Capsicum annuum HOM05D000580 ORTHO05D006815 2.4e-20 101.7 51 94.1
Nn049s41914 Nelumbo nucifera HOM05D000580 ORTHO05D006815 4.0e-20 100.9 51 94.1
CAN.G1595.6 Capsicum annuum HOM05D000580 ORTHO05D006815 5.2e-20 100.5 51 92.2
Gohir.A03G093700 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.2e-20 100.5 51 94.1
HanXRQChr01g0020261 Helianthus annuus HOM05D000580 ORTHO05D001785 5.2e-20 100.5 62 79.0
HanXRQChr02g0052541 Helianthus annuus HOM05D000580 ORTHO05D001785 5.2e-20 100.5 53 90.6
Gohir.1Z049866 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.9e-20 100.1 51 94.1
Gohir.1Z078601 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.9e-20 100.1 51 94.1
Gohir.A09G043800 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.9e-20 100.1 51 94.1
Gohir.A10G070250 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.9e-20 100.1 51 94.1
Gohir.D01G102060 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.9e-20 100.1 51 94.1
Gorai.010G031500 Gossypium raimondii HOM05D000580 ORTHO05D006815 6.9e-20 100.1 51 94.1
HanXRQChr07g0193501 Helianthus annuus HOM05D000580 ORTHO05D006815 6.9e-20 100.1 60 80.0
Medtr2g062930 Medicago truncatula HOM05D000580 ORTHO05D006815 6.9e-20 100.1 50 94.0
Nitab4.5_0010531g0030 Nicotiana tabacum HOM05D000580 ORTHO05D006815 6.9e-20 100.1 51 96.1
Potri.011G074901 Populus trichocarpa HOM05D000580 ORTHO05D006815 8.9e-20 99.8 51 94.1
Potri.011G113742 Populus trichocarpa HOM05D000580 ORTHO05D006815 8.9e-20 99.8 51 94.1
Potri.019G028200 Populus trichocarpa HOM05D000580 ORTHO05D006815 8.9e-20 99.8 51 94.1
SabraPtG0004100 Salix brachista HOM05D000580 ORTHO05D001785 8.9e-20 99.8 51 94.1
Migut.H01967 Erythranthe guttata HOM05D000580 ORTHO05D006815 1.2e-19 99.4 51 94.1
HanXRQChr05g0139711 Helianthus annuus HOM05D000580 ORTHO05D006815 1.2e-19 99.4 51 92.2
HanXRQChr05g0152611 Helianthus annuus HOM05D000580 ORTHO05D006815 1.2e-19 99.4 51 92.2
HanXRQChr08g0223961 Helianthus annuus HOM05D000580 ORTHO05D006815 1.2e-19 99.4 51 92.2
HanXRQChr10g0283641 Helianthus annuus HOM05D000580 ORTHO05D006815 1.2e-19 99.4 51 92.2
HanXRQChr10g0284331 Helianthus annuus HOM05D000580 ORTHO05D006815 1.2e-19 99.4 51 92.2
HanXRQChr10g0318111 Helianthus annuus HOM05D000580 ORTHO05D006815 1.2e-19 99.4 51 92.2
HanXRQChr11g0341921 Helianthus annuus HOM05D000580 ORTHO05D006815 1.2e-19 99.4 51 92.2
HanXRQChr14g0459311 Helianthus annuus HOM05D000580 ORTHO05D006815 1.2e-19 99.4 51 92.2
HanXRQCPg0580131 Helianthus annuus HOM05D000580 ORTHO05D006815 1.2e-19 99.4 51 92.2
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 1.5e-19 99.0 51 92.2
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 1.5e-19 99.0 51 92.2
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 1.5e-19 99.0 51 92.2
Duzib252G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 1.5e-19 99.0 51 92.2
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 1.5e-19 99.0 51 92.2
Psat7g045200 Pisum sativum HOM05D000580 ORTHO05D006815 1.5e-19 99.0 53 90.6
Nitab4.5_0004376g0090 Nicotiana tabacum HOM05D000580 ORTHO05D006815 2.6e-19 98.2 51 96.1
Eucgr.F03245 Eucalyptus grandis HOM05D000580 ORTHO05D006815 3.4e-19 97.8 51 94.1
Glyma.17G186400 Glycine max HOM05D000580 ORTHO05D006815 3.4e-19 97.8 51 90.2
Gohir.A12G178620 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.4e-19 97.8 51 92.2
Gohir.A12G178665 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.4e-19 97.8 51 92.2
Gohir.A12G228900 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.4e-19 97.8 51 92.2
PSO548G0006 Papaver somniferum HOM05D000580 ORTHO05D006815 3.4e-19 97.8 51 94.1
SGA_v2.0_scaffold479G52254 Striga asiatica HOM05D000580 ORTHO05D006815 3.4e-19 97.8 51 92.2
SabraMtG0010300 Salix brachista HOM05D000580 ORTHO05D006815 4.4e-19 97.4 50 94.0
AL2G20610 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
AL2G21660 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
ATCG00710 Arabidopsis thaliana HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
BNapus_Darmor_BZH_scaffold_253p00300 Brassica napus HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
BNapus_Darmor_BZH_scaffold_57p00040 Brassica napus HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
C06p23100 Brassica napus HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
BolC2t08916H Brassica oleracea HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
BolSC29t60604H Brassica oleracea HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
BolSC35t60664H Brassica oleracea HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
BolSC35t60735H Brassica oleracea HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
BolSC46t61015H Brassica oleracea HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
BolSC47t61080H Brassica oleracea HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
BolSC49t61168H Brassica oleracea HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
BraA06t25380Z Brassica rapa HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
BraSC138t45558Z Brassica rapa HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
BraSC58t46498Z Brassica rapa HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
BraSC59t46576Z Brassica rapa HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
Carub.0006s2561 Capsella rubella HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
CARHR282200 Cardamine hirsuta HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
CiPaw.10G124800 Carya illinoinensis HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 90.2
Gohir.A02G100500 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
Gohir.A09G103100 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 92.2
HanXRQChr02g0038651 Helianthus annuus HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 88.2
HanXRQChr02g0052691 Helianthus annuus HOM05D000580 ORTHO05D006815 5.8e-19 97.1 51 90.2
Gohir.A12G178630 Gossypium hirsutum HOM05D000580 ORTHO05D006815 9.9e-19 96.3 51 90.2
Gohir.D04G149675 Gossypium hirsutum HOM05D000580 ORTHO05D006815 9.9e-19 96.3 51 88.2
Psat0s1446g0280 Pisum sativum HOM05D000580 ORTHO05D001785 9.9e-19 96.3 51 88.2
Lsat_1_v5_gn_5_67060 Lactuca sativa HOM05D000580 ORTHO05D006815 1.3e-18 95.9 51 90.2
Sed0004233 Sechium edule HOM05D000580 ORTHO05D006815 1.7e-18 95.5 51 90.2
Sed0008111 Sechium edule HOM05D000580 ORTHO05D006815 1.7e-18 95.5 51 90.2
Sed0015899 Sechium edule HOM05D000580 ORTHO05D006815 1.7e-18 95.5 51 90.2
CAN.G129.14 Capsicum annuum HOM05D000580 ORTHO05D006815 3.8e-18 94.4 50 88.0
Gohir.D02G096801 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.8e-18 94.4 51 86.3
Gorai.005G110300 Gossypium raimondii HOM05D000580 ORTHO05D006815 4.9e-18 94.0 51 88.2
LjContig00319g0006223 Lotus japonicus HOM05D000580 ORTHO05D006815 4.9e-18 94.0 51 86.3
LjContig00319g0024255 Lotus japonicus HOM05D000580 ORTHO05D006815 4.9e-18 94.0 51 86.3
Gohir.A01G128325 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.4e-18 93.6 51 88.2
Gohir.A13G110000 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.4e-18 93.2 50 90.0
Gorai.005G164900 Gossypium raimondii HOM05D000580 ORTHO05D006815 8.4e-18 93.2 50 90.0
Ah.10g027190 Amaranthus hybridus HOM05D000580 ORTHO05D001785 1.1e-17 92.8 54 85.2
Ah.10g027480 Amaranthus hybridus HOM05D000580 ORTHO05D001785 1.1e-17 92.8 54 85.2
CARHR292710 Cardamine hirsuta HOM05D000580 ORTHO05D006815 1.1e-17 92.8 51 88.2
Gohir.D02G147200 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.1e-17 92.8 50 90.0
Lsat_1_v5_gn_5_50340 Lactuca sativa HOM05D000580 ORTHO05D006815 1.1e-17 92.8 51 88.2
C06p22890 Brassica napus HOM05D000580 ORTHO05D006815 1.9e-17 92.0 51 88.2
CAN.G1478.5 Capsicum annuum HOM05D000580 ORTHO05D006815 2.4e-17 91.7 62 77.4
HanXRQChr04g0094321 Helianthus annuus HOM05D000580 ORTHO05D006815 2.4e-17 91.7 51 86.3
Hund29679 Selenicereus undatus HOM05D000580 ORTHO05D006815 2.4e-17 91.7 51 88.2
Ah.10g028960 Amaranthus hybridus HOM05D000580 ORTHO05D001785 3.2e-17 91.3 54 83.3
C07p15330 Brassica napus HOM05D000580 ORTHO05D006815 3.2e-17 91.3 51 82.4
Hma1.2p1_0218F.1_g092720 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 3.2e-17 91.3 51 86.3
Hma1.2p1_2223F.1_g317406 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 3.2e-17 91.3 51 86.3
Nitab4.5_0001105g0140 Nicotiana tabacum HOM05D000580 ORTHO05D006815 4.2e-17 90.9 51 86.3
CAN.G29.17 Capsicum annuum HOM05D000580 ORTHO05D006815 5.4e-17 90.5 51 86.3
Eucgr.B01572 Eucalyptus grandis HOM05D000580 ORTHO05D006815 5.4e-17 90.5 46 93.5
DCAR_032514 Daucus carota HOM05D000580 ORTHO05D006815 7.1e-17 90.1 51 86.3
Gohir.A05G326916 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.1e-17 90.1 51 88.2
HanXRQChr11g0345231 Helianthus annuus HOM05D000580 ORTHO05D006815 7.1e-17 90.1 51 84.3
RcHm_v2.0_CPg0501961 Rosa chinensis HOM05D000580 ORTHO05D006815 7.1e-17 90.1 52 86.5
CAN.G2018.9 Capsicum annuum HOM05D000580 ORTHO05D006815 1.2e-16 89.4 51 86.3
Gorai.008G286600 Gossypium raimondii HOM05D000580 ORTHO05D006815 1.2e-16 89.4 51 84.3
Ah.10g027360 Amaranthus hybridus HOM05D000580 ORTHO05D006815 2.7e-16 88.2 51 86.3
Gohir.A05G286600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.7e-16 88.2 51 86.3
Gohir.D09G103600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.8e-16 86.7 50 82.0
RcHm_v2.0_Chr6g0260481 Rosa chinensis HOM05D000580 ORTHO05D006815 1.0e-15 86.3 52 82.7
RcHm_v2.0_Chr4g0390611 Rosa chinensis HOM05D000580 ORTHO05D006815 1.7e-15 85.5 52 82.7
Sp5g12490 Schrenkiella parvula HOM05D000580 ORTHO05D006815 2.3e-15 85.1 51 84.3
Potri.002G174001 Populus trichocarpa HOM05D000580 ORTHO05D006815 5.1e-15 84.0 49 83.7
Sc07g0006580 Simmondsia chinensis HOM05D000580 ORTHO05D006815 5.1e-15 84.0 49 81.6
Glyma.03G065000 Glycine max HOM05D000580 ORTHO05D006815 6.6e-15 83.6 50 82.0
Gohir.A05G301450 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.6e-15 83.6 51 82.4
Hma1.2p1_0149F.1_g066500 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 6.6e-15 83.6 51 74.5
Glyma.05G092100 Glycine max HOM05D000580 ORTHO05D006815 8.7e-15 83.2 42 90.5
Gohir.A09G103075 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.5e-14 82.4 46 87.0
Lalb_Chr23g0274371 Lupinus albus HOM05D000580 ORTHO05D006815 1.5e-14 82.4 51 80.4
Prupe.7G021700 Prunus persica HOM05D000580 ORTHO05D006815 1.9e-14 82.0 52 78.8
Sed0008946 Sechium edule HOM05D000580 ORTHO05D006815 2.5e-14 81.6 51 82.4
CAN.G648.1 Capsicum annuum HOM05D000580 ORTHO05D006815 3.3e-14 81.3 51 76.5
Solyc11g006675.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 4.3e-14 80.9 38 100.0
LjContig00318g0018353 Lotus japonicus HOM05D000580 ORTHO05D001785 7.3e-14 80.1 43 86.0
Hund08570 Selenicereus undatus HOM05D000580 ORTHO05D006815 1.3e-13 79.3 49 81.6
BolSC29t60484H Brassica oleracea HOM05D000580 ORTHO05D006815 8.1e-13 76.6 40 90.0
Hund10713 Selenicereus undatus HOM05D000580 ORTHO05D001362 1.1e-12 76.3 51 78.4
EL10Ac1g01194 Beta vulgaris HOM05D000580 ORTHO05D001362 2.0e-11 72.0 40 85.0
BolSC46t61022H Brassica oleracea HOM05D000580 ORTHO05D006815 5.8e-11 70.5 37 89.2
MELO3C033895.2 Cucumis melo HOM05D000580 ORTHO05D006815 5.8e-11 70.5 51 68.6
QL93p1043_0018 Quercus lobata HOM05D000580 ORTHO05D001785 5.8e-11 70.5 35 97.1
ClCG02G007580 Citrullus lanatus HOM05D000580 ORTHO05D006815 9.9e-11 69.7 36 91.7
SMO086G0029 Selaginella moellendorffii HOM05D000580 ORTHO05D006815 1.7e-10 68.9 42 73.8
Migut.L00683 Erythranthe guttata HOM05D000580 ORTHO05D006815 3.8e-10 67.8 45 71.1
RcHm_v2.0_Chr2g0140191 Rosa chinensis HOM05D000580 ORTHO05D006815 4.9e-10 67.4 43 79.1
Lalb_Chr23g0274191 Lupinus albus HOM05D000580 ORTHO05D006815 3.2e-09 64.7 54 64.8
Lalb_Chr01g0009811 Lupinus albus HOM05D000580 ORTHO05D006815 1.6e-08 62.4 30 93.3
CsaV3_5G028980 Cucumis sativus L. HOM05D000890 ORTHO05D000697 1.9e-06 55.5 36 72.2
EL10As4g23447 Beta vulgaris HOM05D000580 ORTHO05D006815 7.4e-06 53.5 27 92.6


User provided reference genes

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