Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 1.5e-186 656.0 315 100.0
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 2.9e-158 562.0 319 83.7
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 4.1e-152 541.6 319 80.9
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 6.5e-150 534.3 319 79.6
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 3.1e-120 435.6 311 66.9
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 4.1e-120 435.3 311 66.9
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 7.0e-120 434.5 311 67.5
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 7.0e-120 434.5 311 67.5
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 2.7e-119 432.6 317 65.6
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.0e-118 430.6 310 66.8
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 1.3e-118 430.3 315 64.1
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 2.9e-118 429.1 317 65.3
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 2.9e-118 429.1 317 65.3
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 2.9e-118 429.1 317 65.3
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 5.0e-118 428.3 316 65.5
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.2e-116 423.7 307 64.5
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 1.8e-115 419.9 306 65.4
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 1.3e-113 413.7 310 64.2
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 1.3e-113 413.7 310 63.5
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 1.4e-112 410.2 312 64.7
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 2.4e-112 409.5 317 62.8
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 5.4e-112 408.3 323 61.9
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 2.0e-111 406.4 315 63.5
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 2.7e-111 406.0 252 72.6
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 4.5e-111 405.2 280 65.4
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 1.9e-109 399.8 260 69.2
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 2.5e-109 399.4 230 76.1
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 4.3e-109 398.7 315 61.3
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 5.6e-109 398.3 313 60.7
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 7.3e-109 397.9 270 65.9
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 1.2e-108 397.1 310 62.3
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 1.6e-108 396.7 313 60.7
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 2.1e-108 396.4 279 65.9
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 2.1e-108 396.4 306 62.1
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 2.8e-108 396.0 295 61.7
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 2.8e-108 396.0 310 61.9
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 3.6e-108 395.6 240 72.5
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 4.7e-108 395.2 310 61.9
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 8.0e-108 394.4 271 65.3
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 1.8e-107 393.3 266 67.7
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 2.3e-107 392.9 313 59.7
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 3.0e-107 392.5 284 62.7
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 5.2e-107 391.7 310 61.6
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 6.8e-107 391.3 268 65.3
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 6.8e-107 391.3 229 74.2
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 8.9e-107 391.0 317 60.3
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.2e-106 390.6 310 60.0
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.5e-106 390.2 311 60.8
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.5e-106 390.2 242 71.9
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 2.6e-106 389.4 242 71.5
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 2.6e-106 389.4 274 64.2
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 2.6e-106 389.4 289 63.0
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 3.4e-106 389.0 259 69.5
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 3.4e-106 389.0 242 71.1
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 3.4e-106 389.0 307 60.6
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 5.7e-106 388.3 308 60.7
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 9.8e-106 387.5 277 62.8
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 9.8e-106 387.5 277 65.3
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 9.8e-106 387.5 277 65.3
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 9.8e-106 387.5 277 65.3
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 2.2e-105 386.3 308 60.1
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.2e-105 386.3 271 64.9
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 2.9e-105 386.0 247 69.2
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 2.9e-105 386.0 314 59.2
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 3.7e-105 385.6 261 66.3
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 3.7e-105 385.6 282 62.1
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 4.9e-105 385.2 278 62.2
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 4.9e-105 385.2 235 70.6
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 8.3e-105 384.4 311 59.2
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.1e-104 384.0 274 62.8
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.1e-104 384.0 230 72.2
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 2.4e-104 382.9 232 73.3
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 4.1e-104 382.1 287 62.0
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 4.1e-104 382.1 260 66.2
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 5.4e-104 381.7 312 60.6
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 7.0e-104 381.3 277 63.5
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 1.2e-103 380.6 315 58.1
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 1.2e-103 380.6 322 59.0
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 7.8e-103 377.9 224 73.7
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 7.8e-103 377.9 308 59.1
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.3e-102 377.1 225 72.9
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 1.7e-102 376.7 306 57.8
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 3.0e-102 375.9 224 74.6
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 3.0e-102 375.9 317 57.4
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 3.0e-102 375.9 227 72.2
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 1.5e-101 373.6 264 63.3
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 9.5e-101 370.9 291 59.8
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 1.2e-100 370.5 245 66.9
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 4.7e-100 368.6 224 71.9
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 6.8e-99 364.8 247 66.4
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 1.5e-98 363.6 279 60.2
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 2.6e-98 362.8 269 62.8
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 2.6e-98 362.8 235 71.1
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 7.5e-98 361.3 270 62.6
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 9.8e-98 360.9 283 56.9
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.3e-97 360.5 265 61.1
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 2.9e-97 359.4 266 62.0
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.9e-97 359.4 249 63.1
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 6.4e-97 358.2 230 67.4
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 3.2e-96 355.9 272 58.8
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 5.4e-96 355.1 280 59.3
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 1.2e-95 354.0 266 60.5
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 2.7e-95 352.8 216 72.2
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 3.5e-95 352.4 229 68.1
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.0e-94 350.9 219 71.2
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.9e-93 346.7 246 62.2
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 9.5e-93 344.4 249 60.2
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 1.6e-92 343.6 233 66.5
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 1.6e-92 343.6 237 63.3
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 3.6e-92 342.4 232 65.9
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 8.1e-92 341.3 242 64.5
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 2.3e-91 339.7 249 59.8
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 8.9e-91 337.8 195 75.4
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 1.2e-90 337.4 222 66.2
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 2.0e-90 336.7 230 66.5
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 2.0e-90 336.7 224 64.7
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 2.0e-90 336.7 249 59.0
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 2.0e-90 336.7 266 59.8
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.6e-90 336.3 223 65.0
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 3.4e-90 335.9 249 58.2
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 1.7e-89 333.6 230 61.3
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 6.4e-89 331.6 209 72.2
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 3.2e-88 329.3 255 60.4
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 9.2e-88 327.8 245 60.4
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.2e-87 327.4 233 60.5
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 3.5e-87 325.9 228 62.7
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 9.5e-85 317.8 248 56.0
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.1e-84 316.6 309 51.8
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 2.8e-84 316.2 245 59.2
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 2.8e-84 316.2 245 59.2
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 2.8e-84 316.2 245 59.2
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 3.6e-84 315.8 225 63.6
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 8.1e-84 314.7 245 59.2
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 4.0e-83 312.4 245 58.4
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 8.4e-81 304.7 231 59.7
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 1.4e-80 303.9 194 70.6
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 4.1e-80 302.4 266 53.0
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 1.2e-76 290.8 242 55.8
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.2e-76 290.8 294 49.7
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 1.3e-73 280.8 199 63.8
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 1.3e-73 280.8 169 72.8
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 1.7e-73 280.4 230 55.7
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 2.4e-72 276.6 219 56.6
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 2.1e-71 273.5 247 53.4
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 1.0e-70 271.2 234 52.1
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 8.7e-70 268.1 217 57.6
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 3.3e-69 266.2 248 52.4
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 8.1e-68 261.5 253 51.8
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 6.9e-67 258.5 163 71.8
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.0e-66 256.9 228 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 2.6e-66 256.5 234 51.3
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 3.4e-66 256.1 212 58.0
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 9.9e-66 254.6 214 57.5
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 3.8e-65 252.7 234 47.9
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 1.9e-64 250.4 235 48.5
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 8.7e-62 241.5 227 48.5
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 4.3e-61 239.2 184 64.1
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 7.4e-61 238.4 226 49.1
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 1.2e-58 231.1 162 61.1
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.4e-56 224.2 247 45.3
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 1.9e-56 223.8 252 44.4
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 4.3e-53 212.6 247 42.1
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 7.4e-53 211.8 191 52.9
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 6.2e-52 208.8 191 49.7
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 6.9e-51 205.3 129 69.0
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 1.5e-50 204.1 220 43.2
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 3.4e-50 203.0 173 57.2
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 5.8e-50 202.2 319 36.7
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 1.7e-49 200.7 225 45.8
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 9.0e-43 178.3 152 53.9
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 7.9e-39 165.2 109 65.1
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 6.7e-38 162.2 99 68.7
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 1.0e-33 148.3 87 72.4
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 7.4e-29 132.1 92 63.0
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 2.1e-15 87.4 49 75.5
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 2.3e-14 84.0 74 50.0
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 6.3e-12 75.9 96 43.8
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 1.5e-08 64.7 41 68.3


User provided reference genes

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