Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 0.0e+00 1089.7 579 100.0
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 5.6e-216 754.6 602 71.4
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 1.7e-204 716.5 556 73.0
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 1.6e-154 550.4 582 56.2
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 4.7e-154 548.9 589 57.0
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 5.2e-153 545.4 599 55.6
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 4.8e-151 538.9 604 53.8
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 7.0e-150 535.0 409 69.9
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 9.1e-150 534.6 507 60.0
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 1.2e-149 534.3 593 54.0
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 6.5e-148 528.5 577 55.6
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 5.5e-147 525.4 565 56.5
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.6e-146 523.9 643 51.0
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 8.0e-146 521.5 570 55.6
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.0e-145 521.2 577 55.1
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 4.0e-145 519.2 417 68.8
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 1.5e-144 517.3 599 53.8
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.3e-143 514.2 625 51.4
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.7e-143 512.7 635 51.2
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 3.7e-143 512.7 592 54.2
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 8.3e-143 511.5 411 66.9
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 5.4e-142 508.8 593 53.0
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 7.0e-142 508.4 647 49.8
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 9.2e-142 508.1 589 51.3
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 2.0e-141 506.9 369 72.6
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 2.7e-141 506.5 530 56.8
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 2.7e-141 506.5 410 67.1
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 4.5e-141 505.8 553 53.2
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 1.0e-140 504.6 573 54.3
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 1.7e-140 503.8 573 52.4
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 2.3e-140 503.4 504 60.5
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 3.8e-140 502.7 483 59.2
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 1.1e-139 501.1 482 59.1
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 4.3e-139 499.2 602 53.0
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 5.6e-139 498.8 371 69.0
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 7.3e-139 498.4 349 72.2
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 9.5e-139 498.0 406 65.0
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.1e-138 496.9 669 47.2
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 2.8e-138 496.5 408 67.4
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 3.6e-138 496.1 408 66.2
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 3.6e-138 496.1 404 66.8
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 4.7e-138 495.7 607 52.6
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 1.0e-137 494.6 408 66.9
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.4e-137 494.2 406 64.5
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 3.0e-137 493.0 407 65.4
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 5.2e-137 492.3 405 65.7
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 6.8e-137 491.9 371 69.0
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 2.6e-136 490.0 528 57.2
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 2.6e-136 490.0 344 73.8
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 1.7e-135 487.3 407 64.6
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 2.2e-135 486.9 481 58.4
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 4.9e-135 485.7 405 64.7
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 8.3e-135 485.0 350 70.9
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 1.8e-134 483.8 353 71.7
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 9.2e-134 481.5 658 47.9
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 3.5e-133 479.6 482 56.0
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 4.6e-133 479.2 592 53.7
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 4.6e-133 479.2 397 66.8
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 5.9e-133 478.8 513 55.6
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 1.0e-132 478.0 408 64.0
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 3.9e-132 476.1 340 71.2
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 1.6e-130 470.7 597 49.6
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 2.2e-127 460.3 403 61.3
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 6.4e-127 458.8 348 67.0
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 8.3e-127 458.4 319 73.0
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 3.5e-125 453.0 314 72.9
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 1.3e-124 451.1 465 55.3
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 1.7e-124 450.7 466 55.4
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 2.3e-124 450.3 409 61.1
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 1.1e-123 448.0 468 55.8
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 1.9e-123 447.2 460 55.0
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 2.5e-123 446.8 377 65.8
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 2.5e-123 446.8 367 65.9
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 2.5e-123 446.8 377 65.8
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 2.5e-123 446.8 584 49.7
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 4.7e-122 442.6 360 66.7
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 4.7e-122 442.6 582 48.3
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.5e-120 437.6 384 63.3
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 2.6e-120 436.8 404 59.4
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 7.5e-120 435.3 416 59.9
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 7.5e-120 435.3 375 60.3
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 2.2e-119 433.7 523 53.9
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 3.7e-119 433.0 549 50.5
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 8.3e-119 431.8 574 49.7
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 4.6e-117 426.0 601 45.4
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 3.0e-116 423.3 321 69.8
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 1.5e-115 421.0 485 50.7
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 4.7e-114 416.0 380 59.5
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 6.2e-114 415.6 286 74.8
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 1.1e-113 414.8 404 56.7
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 3.4e-112 409.8 602 44.9
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 7.6e-112 408.7 335 64.2
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 6.0e-109 399.1 286 72.7
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 6.0e-109 399.1 286 72.7
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 3.0e-108 396.7 286 72.7
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 1.6e-98 364.4 588 45.1
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 6.0e-77 292.7 332 49.4
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 1.6e-74 284.6 175 80.0
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 5.5e-70 269.6 296 49.0
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 2.7e-69 267.3 222 65.8
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 6.7e-68 262.7 335 44.8
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 1.2e-61 241.9 280 48.9
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 3.1e-57 227.3 180 66.1
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 5.2e-52 209.9 192 59.4
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 1.5e-46 191.8 288 42.4
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 7.2e-46 189.5 162 63.6
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 1.0e-44 185.7 366 36.9
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 1.4e-44 185.3 299 39.8
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 4.4e-43 180.3 156 64.7
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 1.4e-41 175.3 290 39.3
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 1.5e-30 138.7 154 51.9
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 1.6e-29 135.2 320 37.5
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 8.0e-29 132.9 288 37.2
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 4.7e-21 107.1 83 65.1
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 9.8e-19 99.4 83 59.0
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 1.2e-13 82.4 70 52.9
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 1.2e-13 82.4 70 52.9
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 1.6e-13 82.0 71 54.9
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 2.1e-13 81.6 70 51.4
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 8.0e-13 79.7 71 53.5
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.4e-12 79.0 189 28.6
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 3.4e-11 74.3 69 47.8
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 2.2e-10 71.6 51 60.8
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 2.2e-10 71.6 51 60.8
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 2.4e-09 68.2 82 53.7
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 2.4e-09 68.2 65 50.8


User provided reference genes

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