Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 3.9e-154 548.5 371 100.0
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 8.8e-122 441.0 372 87.6
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 3.3e-121 439.1 372 87.6
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 1.6e-118 430.3 372 86.3
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.0e-106 389.4 373 70.2
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 8.8e-106 387.9 376 79.3
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.2e-105 387.5 373 79.9
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.3e-104 384.0 375 78.7
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 4.5e-102 375.6 382 78.3
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 5.9e-102 375.2 376 76.6
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 1.9e-100 370.2 374 77.5
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 2.1e-99 366.7 374 76.5
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 1.0e-98 364.4 375 78.4
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 2.3e-98 363.2 376 76.9
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 5.2e-98 362.1 376 68.4
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 6.8e-98 361.7 375 76.8
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 6.8e-98 361.7 376 77.7
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 8.9e-98 361.3 375 62.1
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 1.5e-97 360.5 402 62.9
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 1.5e-97 360.5 378 75.1
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 2.0e-97 360.1 375 78.1
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 2.6e-97 359.8 375 77.9
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 2.6e-97 359.8 375 76.5
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 2.6e-97 359.8 377 75.9
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 3.4e-97 359.4 378 76.7
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 3.4e-97 359.4 378 76.7
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 3.4e-97 359.4 375 76.5
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 4.4e-97 359.0 375 77.6
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 4.4e-97 359.0 377 76.1
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 5.7e-97 358.6 377 76.1
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 1.3e-96 357.5 376 62.0
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.7e-96 357.1 375 75.2
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 8.3e-96 354.8 374 76.5
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 8.3e-96 354.8 373 75.3
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 1.1e-95 354.4 376 76.3
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.8e-95 353.6 381 76.9
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 1.8e-95 353.6 377 77.2
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.6e-94 350.5 398 73.1
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 1.6e-94 350.5 379 76.3
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.0e-93 346.3 375 74.4
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 5.0e-93 345.5 373 74.5
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 5.6e-92 342.0 373 76.7
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 8.0e-91 338.2 374 73.0
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 2.3e-90 336.7 375 74.9
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 1.2e-89 334.3 347 79.5
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 2.6e-89 333.2 377 72.7
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.4e-89 332.8 373 74.0
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 2.2e-88 330.1 372 74.7
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 2.9e-88 329.7 377 73.5
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.7e-88 329.3 380 72.1
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 8.3e-88 328.2 374 74.6
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 8.3e-88 328.2 363 74.9
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 4.1e-87 325.9 385 70.9
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 4.1e-87 325.9 362 63.3
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 1.6e-86 323.9 344 74.7
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.6e-86 323.9 373 73.7
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 2.7e-86 323.2 374 71.1
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 5.6e-84 315.5 343 76.1
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 7.3e-84 315.1 377 72.9
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 5.2e-82 308.9 374 70.3
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 1.2e-81 307.8 384 68.2
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 1.5e-81 307.4 368 69.8
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 1.1e-79 301.2 382 72.0
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 5.4e-79 298.9 391 71.1
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 2.1e-78 297.0 358 70.9
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.0e-77 294.7 385 67.5
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 6.6e-77 292.0 389 67.6
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 1.9e-76 290.4 388 67.8
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 4.3e-76 289.3 348 75.3
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 4.3e-76 289.3 377 69.2
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 5.6e-76 288.9 348 75.3
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.1e-74 284.6 375 68.3
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.4e-74 284.3 355 71.5
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.8e-74 283.9 376 67.8
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 1.8e-74 283.9 368 69.8
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 3.1e-74 283.1 381 65.9
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 2.0e-73 280.4 495 40.0
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 1.1e-71 274.6 368 69.0
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 3.2e-71 273.1 382 64.7
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 5.4e-71 272.3 334 63.2
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 5.4e-71 272.3 328 73.5
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.6e-70 270.8 382 64.1
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.6e-70 270.8 382 64.4
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.6e-70 270.8 382 64.1
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 2.7e-70 270.0 385 69.1
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 7.8e-70 268.5 370 65.9
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 1.0e-69 268.1 384 65.6
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 2.3e-69 266.9 384 66.1
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 1.9e-68 263.8 378 46.0
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 2.5e-68 263.5 367 65.9
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 7.3e-68 261.9 390 64.6
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.6e-67 260.8 367 68.4
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 2.1e-67 260.4 370 64.9
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 3.6e-67 259.6 274 79.9
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 3.1e-66 256.5 335 68.7
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 4.0e-66 256.1 369 64.2
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 2.0e-65 253.8 386 64.0
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 9.9e-65 251.5 379 53.6
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 7.1e-63 245.4 381 53.3
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 2.3e-61 240.4 388 64.4
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 3.0e-61 240.0 328 73.8
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 3.9e-61 239.6 318 70.8
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 1.9e-60 237.3 383 61.6
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 2.1e-59 233.8 269 76.6
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.1e-58 231.5 378 61.9
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 1.4e-58 231.1 361 62.6
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.7e-56 224.2 325 70.2
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 1.7e-56 224.2 320 71.2
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 6.0e-54 215.7 365 62.2
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 3.3e-52 209.9 359 61.0
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 6.2e-51 205.7 309 66.3
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 1.1e-47 194.9 132 87.1
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 9.3e-47 191.8 132 83.3
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 2.1e-46 190.7 182 62.6
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 7.9e-46 188.7 377 55.4
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 6.7e-45 185.7 356 58.7
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 8.7e-45 185.3 132 81.1
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 1.5e-44 184.5 307 64.2
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 1.1e-42 178.3 168 62.5
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 2.4e-42 177.2 183 57.9
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 5.8e-41 172.6 312 58.7
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 1.6e-38 164.5 306 59.8
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 1.6e-38 164.5 369 53.1
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 5.9e-33 146.0 173 53.2
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 4.6e-30 136.3 133 65.4
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 1.0e-29 135.2 110 73.6
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 1.4e-26 124.8 245 64.1
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 3.4e-25 120.2 292 55.5
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 4.5e-25 119.8 361 50.7
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 5.1e-21 106.3 155 43.9
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 4.8e-19 99.8 228 55.7
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 3.4e-17 93.6 408 46.3
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 5.9e-17 92.8 101 51.5
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 7.2e-15 85.9 84 75.0
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.7e-14 84.0 58 70.7
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 4.7e-14 83.2 56 73.2
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 2.3e-13 80.9 56 71.4


User provided reference genes

Program Settings