Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 3.1e-120 435.3 236 100.0
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 3.4e-103 378.6 308 72.4
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 6.5e-86 321.2 281 65.5
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 2.1e-84 316.2 309 64.7
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 4.8e-81 305.1 304 60.5
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 1.5e-79 300.1 301 60.5
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 2.0e-66 256.5 328 49.1
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 2.0e-63 246.5 305 50.2
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 2.7e-60 236.1 303 49.2
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 8.0e-60 234.6 324 50.6
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 1.0e-59 234.2 294 50.0
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.8e-59 233.4 300 48.0
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 1.5e-58 230.3 300 47.7
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.6e-58 229.6 319 47.6
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 3.3e-58 229.2 304 47.4
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 4.4e-58 228.8 328 45.7
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 1.3e-57 227.3 323 47.4
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 1.7e-57 226.9 323 48.0
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 8.2e-57 224.6 334 45.5
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 2.4e-56 223.0 324 45.4
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 4.1e-56 222.2 313 47.6
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 2.0e-55 219.9 362 43.6
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 4.5e-55 218.8 342 43.6
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.0e-54 217.6 301 48.8
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 5.0e-54 215.3 303 47.2
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 3.2e-53 212.6 292 50.7
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.6e-52 210.3 337 40.9
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 2.1e-52 209.9 327 45.0
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 2.1e-52 209.9 325 44.0
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 2.7e-52 209.5 330 43.6
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 1.4e-51 207.2 318 45.3
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 1.4e-51 207.2 378 39.2
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 5.2e-51 205.3 331 42.3
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 8.8e-51 204.5 304 43.4
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 1.2e-50 204.1 332 42.8
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 2.0e-50 203.4 315 45.1
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 2.6e-50 203.0 305 46.2
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 4.4e-50 202.2 315 45.1
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 4.4e-50 202.2 333 43.5
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 9.8e-50 201.1 333 43.2
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 9.8e-50 201.1 333 42.0
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.7e-49 200.3 321 44.9
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 1.7e-49 200.3 303 43.9
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 4.1e-48 195.7 350 42.0
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 4.1e-48 195.7 322 43.2
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 5.4e-48 195.3 397 38.5
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 7.0e-48 194.9 306 45.1
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 9.1e-48 194.5 328 42.1
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 1.6e-47 193.7 358 39.9
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 4.5e-47 192.2 316 43.4
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 7.7e-47 191.4 342 43.0
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 1.0e-46 191.0 295 43.1
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 1.7e-46 190.3 303 45.2
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 2.2e-46 189.9 342 42.7
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 8.5e-46 188.0 325 44.6
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 1.5e-45 187.2 325 42.5
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 3.2e-45 186.0 291 44.0
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 7.2e-45 184.9 272 46.3
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 2.7e-44 183.0 326 42.3
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 3.6e-44 182.6 328 40.9
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 8.0e-44 181.4 271 46.5
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 8.0e-44 181.4 328 40.9
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 1.0e-43 181.0 326 41.1
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 8.8e-43 177.9 273 45.8
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 1.2e-42 177.6 306 39.2
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 2.8e-41 172.9 295 41.7
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 2.8e-41 172.9 347 38.6
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 6.3e-41 171.8 305 42.6
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 8.3e-41 171.4 237 47.7
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 8.3e-41 171.4 237 47.7
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 4.1e-40 169.1 373 35.9
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 9.1e-40 167.9 361 35.5
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 1.2e-39 167.5 281 43.1
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 2.0e-39 166.8 242 44.6
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 3.5e-39 166.0 240 44.2
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 3.5e-39 166.0 240 44.2
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 3.5e-39 166.0 294 42.9
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 7.7e-39 164.9 245 43.3
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 7.7e-39 164.9 260 45.4
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 2.3e-38 163.3 243 44.4
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 2.9e-38 162.9 246 43.9
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 7.2e-37 158.3 163 55.2
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 7.2e-37 158.3 361 36.6
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 1.6e-36 157.1 235 43.4
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 3.6e-36 156.0 335 37.6
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 4.7e-36 155.6 344 36.3
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 3.0e-35 152.9 261 42.1
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 2.6e-34 149.8 316 40.2
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 9.8e-34 147.9 185 49.2
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.7e-33 147.1 271 40.6
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 2.9e-33 146.4 276 38.4
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.8e-32 143.7 214 46.7
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 2.4e-32 143.3 383 32.9
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 9.2e-32 141.4 349 34.1
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 1.2e-31 141.0 365 35.1
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 1.6e-31 140.6 380 32.4
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 3.5e-31 139.4 161 54.0
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.0e-30 137.9 382 32.2
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.9e-29 133.7 194 47.4
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 2.8e-28 129.8 226 40.7
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 2.8e-28 129.8 63 100.0
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 2.8e-28 129.8 63 100.0
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.7e-28 129.0 153 55.6
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.2e-28 128.6 155 49.0
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.4e-27 127.5 162 51.9
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 5.8e-26 122.1 257 38.1
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 1.7e-25 120.6 169 46.2
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 3.7e-25 119.4 257 37.7
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 1.2e-23 114.4 254 37.4
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 3.5e-23 112.8 134 49.3
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 7.8e-23 111.7 134 52.2
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 6.6e-22 108.6 148 44.6
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 3.3e-21 106.3 254 36.6
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 2.3e-19 100.1 122 54.1
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 5.2e-19 99.0 100 58.0
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 5.2e-19 99.0 65 72.3
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 4.4e-18 95.9 224 33.9
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.8e-18 95.5 108 55.6
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.8e-18 95.5 108 55.6
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 4.9e-17 92.4 194 36.6
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 1.2e-15 87.8 124 46.8
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.9e-13 80.5 158 36.1
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.9e-13 80.5 137 37.2
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 8.9e-11 71.6 137 37.2
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 7.6e-10 68.6 120 35.0
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 9.2e-08 61.6 65 56.9
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 6.6e-06 55.5 65 50.8
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 6.6e-06 55.5 65 50.8


User provided reference genes

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