Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 4748.7 2450 100.0
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 3875.1 2456 81.7
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 3806.9 2456 79.8
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 3786.9 2456 79.6
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2286.1 2591 50.4
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2191.4 2586 48.2
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2177.1 2592 47.9
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 2171.0 2604 48.5
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 2166.3 2587 48.0
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2155.2 2591 47.9
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 2149.0 2598 47.7
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2135.5 2599 47.2
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2124.0 2599 46.7
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2107.4 2585 47.3
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 2093.9 2591 46.4
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2073.1 2585 46.9
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 2072.0 2595 46.7
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2062.0 2590 46.6
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2030.8 2619 46.0
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2030.4 2600 45.5
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 2027.7 2590 46.2
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1979.9 2593 45.6
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1947.9 2586 44.6
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1944.5 2592 43.8
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1890.5 2514 45.1
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1868.6 2588 43.7
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1861.3 2573 43.5
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1854.7 2597 43.1
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1842.0 2616 42.2
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1842.0 2228 47.1
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1838.5 2703 42.4
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1823.5 2615 41.9
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1822.4 2641 42.6
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1821.6 2591 42.3
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1818.5 2578 43.1
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1815.0 2593 42.1
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1812.3 2557 42.7
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1804.3 2594 42.7
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1803.9 2570 43.0
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1765.0 2437 44.2
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1760.7 2583 42.0
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1758.8 2578 42.0
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1741.5 2580 41.6
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1735.7 2581 42.2
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1716.8 2367 43.9
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1681.0 2575 40.3
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1676.4 2594 40.4
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1664.0 2533 41.2
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1663.7 2456 42.1
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1662.1 2606 40.8
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1660.2 2605 40.0
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1658.3 2573 40.0
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1649.8 2583 40.0
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1640.6 2581 39.8
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1634.4 2574 40.1
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1630.2 2648 40.1
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1629.4 2649 39.9
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1629.0 2586 39.8
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1619.8 2638 39.2
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1616.7 2588 40.1
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1612.8 2518 40.5
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1610.5 2616 39.8
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1607.4 2420 41.7
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1607.0 2614 39.4
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1587.8 2659 38.4
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1581.6 2623 39.0
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1575.1 2639 38.9
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1565.4 2643 38.5
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1521.1 2513 40.4
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1507.3 2663 37.9
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1466.4 1797 47.3
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1464.5 2129 42.0
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1457.2 2444 39.0
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1456.8 2482 37.6
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1448.7 2632 37.5
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1446.0 2632 37.7
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1431.4 2667 37.0
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1422.5 2671 36.9
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1408.7 2503 38.0
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1362.8 2538 37.2
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1348.6 2646 34.8
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1337.8 2221 38.5
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1321.6 2334 36.9
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1308.1 2581 36.4
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1281.9 2033 39.7
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1276.2 2034 39.8
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1256.5 2576 35.5
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1256.5 2579 34.3
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1236.9 2329 36.2
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1218.8 2224 36.9
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1208.7 1595 44.1
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1172.5 2009 37.2
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1120.9 2103 37.1
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 1091.6 2388 34.5
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 8.4e-311 1071.6 2201 35.2
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 2.3e-287 993.8 1806 38.4
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.2e-261 907.5 1694 35.8
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.0e-230 804.7 911 49.9
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 2.5e-220 771.2 768 55.9
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 1.4e-202 712.2 2744 26.7
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 2.4e-199 701.4 811 48.2
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 4.1e-191 674.1 2444 26.9
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 3.8e-181 641.0 597 59.0
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 7.7e-174 616.7 2694 24.9
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.7e-171 608.2 536 59.1
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.6e-169 601.7 1142 35.9
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 6.6e-157 560.5 598 53.0
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 5.4e-151 540.8 1248 33.0
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.5e-148 532.7 2502 26.1
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.7e-142 511.9 549 52.6
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 6.0e-142 510.8 2724 24.2
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.0e-137 495.7 727 43.1
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 7.3e-132 477.2 752 41.1
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 3.0e-125 455.3 541 47.5
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.6e-121 442.2 910 34.7
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 9.3e-119 433.7 1162 30.6
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.9e-111 409.5 1097 30.5
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 7.4e-108 397.5 647 42.2
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.8e-106 392.9 398 53.5
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 5.0e-96 358.2 891 31.3
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 8.5e-96 357.5 680 37.4
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 3.0e-93 349.0 308 60.7
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.4e-90 339.3 475 41.5
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 5.9e-89 334.7 345 53.9
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.4e-82 312.8 472 42.4
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.1e-62 246.5 275 48.4
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.2e-52 214.2 186 62.4
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 1.5e-52 213.8 1044 26.1
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 5.9e-49 201.8 183 59.0
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 2.5e-47 196.4 336 38.4
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 1.4e-45 190.7 241 44.8
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.6e-44 186.4 167 58.1
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.1e-42 181.0 362 35.6
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.6e-38 167.2 322 33.5
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.7e-35 157.1 411 28.5
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 2.2e-35 156.8 234 42.7
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.9e-35 156.4 273 35.2
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 3.7e-35 156.0 146 56.8
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 3.0e-32 146.4 201 39.3
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.9e-31 143.7 151 53.0
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 5.2e-29 135.6 140 50.7
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 6.8e-29 135.2 349 32.4
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.9e-26 127.1 173 41.6
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 3.5e-25 122.9 120 53.3
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.2e-22 114.4 119 47.9
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 2.0e-20 107.1 122 54.1
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 4.4e-20 105.9 238 34.5
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 4.1e-18 99.4 146 40.4
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 1.2e-17 97.8 343 26.2
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 1.6e-17 97.4 236 29.7
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 2.5e-15 90.1 190 34.7
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 2.5e-15 90.1 92 48.9
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 4.7e-14 85.9 145 37.2
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 9.0e-13 81.6 70 60.0
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 2.0e-12 80.5 101 48.5
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 7.6e-12 78.6 107 40.2
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 2.9e-11 76.6 94 44.7
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 2.9e-11 76.6 94 44.7
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.4e-10 73.6 154 35.7
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 4.2e-10 72.8 78 51.3
Psat5g198920 Pisum sativum HOM05D003876 ORTHO05D004560 1.2e-09 71.2 93 45.2
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 2.1e-09 70.5 48 75.0
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 7.8e-09 68.6 79 49.4
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 1.3e-08 67.8 67 46.3
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 3.0e-08 66.6 437 20.4
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.9e-07 63.9 241 26.6
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 4.3e-07 62.8 90 34.4
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.3e-07 62.0 96 35.4


User provided reference genes

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