Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 1.0e-89 334.3 329 100.0
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 1.4e-70 270.8 329 86.9
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 1.2e-69 267.7 329 86.6
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 1.9e-67 260.4 328 87.8
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 2.7e-66 256.5 329 84.5
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 1.1e-51 208.0 327 65.4
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 8.8e-49 198.4 327 78.3
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 4.4e-48 196.1 325 76.0
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 4.4e-48 196.1 329 77.2
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 5.7e-48 195.7 328 76.2
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 9.7e-48 194.9 327 75.2
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 2.2e-47 193.7 327 76.8
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 1.1e-46 191.4 324 65.4
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 1.1e-46 191.4 328 75.0
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 3.1e-46 189.9 328 75.3
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 4.5e-45 186.0 327 75.8
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 4.5e-45 186.0 326 74.8
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 7.7e-45 185.3 327 76.1
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 3.8e-44 183.0 329 73.3
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 6.5e-44 182.2 327 74.9
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 1.1e-43 181.4 327 75.5
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 3.2e-43 179.9 327 75.2
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 4.2e-43 179.5 329 74.5
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 9.4e-43 178.3 328 74.7
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 2.7e-42 176.8 328 75.0
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 2.7e-42 176.8 328 75.0
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 3.6e-42 176.4 327 72.8
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 3.6e-42 176.4 328 74.4
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 3.6e-42 176.4 328 74.4
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 4.7e-42 176.0 328 74.7
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 6.1e-42 175.6 324 74.4
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 6.1e-42 175.6 329 75.1
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 6.1e-42 175.6 328 73.5
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 1.0e-41 174.9 327 72.5
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 1.0e-41 174.9 328 71.3
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 2.3e-41 173.7 316 77.2
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 4.0e-41 172.9 317 76.3
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 4.0e-41 172.9 330 73.9
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 8.8e-41 171.8 327 74.0
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 1.5e-40 171.0 329 74.2
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 1.3e-39 167.9 328 74.4
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 2.2e-39 167.2 321 72.6
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 2.2e-39 167.2 319 74.6
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 2.8e-39 166.8 328 69.8
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 2.8e-39 166.8 328 73.5
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 4.8e-39 166.0 328 74.1
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 8.3e-39 165.2 369 62.1
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 1.1e-38 164.9 324 74.1
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 1.4e-38 164.5 319 72.7
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 2.4e-38 163.7 324 72.5
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 5.4e-38 162.5 328 71.6
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 7.0e-38 162.2 325 72.9
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 7.0e-38 162.2 324 70.4
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 2.7e-37 160.2 328 71.3
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 2.7e-37 160.2 328 72.3
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 4.5e-37 159.5 325 72.9
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 7.7e-37 158.7 325 72.6
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 7.7e-37 158.7 328 71.6
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 1.0e-36 158.3 324 71.9
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.3e-36 157.9 318 72.6
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 1.3e-36 157.9 324 71.6
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 2.3e-36 157.1 328 72.3
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 8.6e-36 155.2 328 72.0
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 8.6e-36 155.2 319 73.0
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 1.1e-35 154.8 328 72.3
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 1.5e-35 154.5 329 72.3
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 2.5e-35 153.7 328 71.3
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 3.3e-35 153.3 328 71.3
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 3.3e-35 153.3 328 71.0
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 5.5e-35 152.5 324 71.0
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 5.5e-35 152.5 328 70.7
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 7.2e-35 152.1 317 45.1
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 1.6e-34 151.0 312 74.7
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 3.6e-34 149.8 316 71.8
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 5.2e-33 146.0 329 69.3
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 9.8e-32 141.7 328 71.0
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 9.8e-32 141.7 325 70.8
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 1.3e-31 141.4 318 72.0
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 4.1e-30 136.3 319 68.3
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 4.1e-30 136.3 314 62.7
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 4.1e-30 136.3 310 72.6
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 1.2e-29 134.8 322 60.2
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 1.6e-29 134.4 303 74.9
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 1.0e-28 131.7 302 74.5
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 2.3e-28 130.6 319 60.5
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 5.0e-28 129.4 317 60.3
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 5.0e-28 129.4 315 60.3
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 5.0e-28 129.4 96 65.6
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 6.6e-28 129.0 319 60.5
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 8.6e-28 128.6 275 80.7
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 1.2e-26 124.8 328 68.9
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 2.1e-26 124.0 328 68.9
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 2.8e-26 123.6 321 63.6
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 6.1e-26 122.5 318 44.0
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 1.0e-25 121.7 296 38.5
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 1.2e-24 118.2 330 57.3
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 4.4e-24 116.3 328 48.8
Ah.02g121760 Amaranthus hybridus HOM05D006835 ORTHO05D008587 1.3e-23 114.8 87 57.5
VMungo1309G0603 Vigna mungo HOM05D006835 ORTHO05D008587 1.9e-22 110.9 286 74.5
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 9.2e-22 108.6 333 61.9
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 9.2e-22 108.6 333 61.9
FAN15G1646 Fragaria x ananassa HOM05D006835 ORTHO05D008587 2.0e-21 107.5 80 65.0
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 3.5e-21 106.7 328 61.9
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 7.8e-21 105.5 333 61.6
SalBow3G3248 Salvia bowleyana HOM05D006835 ORTHO05D008587 2.3e-20 104.0 278 75.2
SalBow4G0758 Salvia bowleyana HOM05D006835 ORTHO05D008587 4.7e-18 96.3 278 73.7
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 8.0e-18 95.5 71 62.0
CSS0013930 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 2.3e-17 94.0 64 65.6
TAR381G1325 Trochodendron aralioides HOM05D006835 ORTHO05D008587 4.6e-13 79.7 57 59.6
vmacro17002 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.7e-12 77.8 101 46.5
SEGI_34779 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 9.5e-11 72.0 60 48.3
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 1.2e-10 71.6 74 50.0
HPP92_022026 Vanilla planifolia HOM05D006835 ORTHO05D008587 2.8e-10 70.5 59 54.2
Mapoly0015s0200 Marchantia polymorpha HOM05D006835 ORTHO05D008587 2.0e-08 64.3 83 41.0
vmacro17159 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 8.3e-07 58.9 251 24.7
SEGI_18890 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 2.4e-06 57.4 43 53.5


User provided reference genes

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