Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 1.4e-226 789.3 385 100.0
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 5.1e-197 691.0 384 89.3
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 1.3e-181 639.8 381 84.0
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 7.4e-172 607.4 382 79.3
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 4.5e-169 598.2 384 79.7
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 5.8e-169 597.8 369 81.0
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 2.9e-168 595.5 377 79.6
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 2.9e-168 595.5 381 78.7
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 2.9e-168 595.5 381 79.8
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 3.8e-168 595.1 379 79.7
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 4.9e-168 594.7 383 78.9
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 1.1e-167 593.6 376 79.3
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.4e-167 593.2 377 79.0
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.9e-167 592.8 323 86.7
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 9.3e-167 590.5 331 86.1
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 1.2e-166 590.1 377 77.5
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 3.5e-166 588.6 369 79.7
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 7.9e-166 587.4 376 78.7
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 1.0e-165 587.0 377 78.5
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 1.0e-165 587.0 379 79.2
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 1.0e-165 587.0 381 77.7
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.8e-165 586.3 380 77.1
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.9e-165 585.1 321 86.9
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 5.1e-165 584.7 367 79.8
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 5.1e-165 584.7 326 85.3
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 6.7e-165 584.3 379 76.5
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 6.7e-165 584.3 379 78.4
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 6.7e-165 584.3 385 77.1
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 8.7e-165 583.9 376 77.9
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 1.1e-164 583.6 394 75.9
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.1e-164 583.6 377 77.2
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.1e-164 583.6 380 77.6
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.1e-164 583.6 379 78.4
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 1.1e-164 583.6 362 78.2
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.5e-164 583.2 377 76.9
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 1.5e-164 583.2 378 78.8
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.9e-164 582.8 361 80.1
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 3.3e-164 582.0 342 83.3
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 4.3e-164 581.6 377 77.7
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 4.3e-164 581.6 377 77.7
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 4.3e-164 581.6 384 77.3
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 5.7e-164 581.3 380 77.4
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 7.4e-164 580.9 378 77.2
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 9.6e-164 580.5 341 83.3
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 9.6e-164 580.5 377 76.7
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.3e-163 580.1 361 80.1
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.3e-163 580.1 387 75.2
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 2.8e-163 578.9 359 79.1
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 2.8e-163 578.9 317 87.1
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 2.8e-163 578.9 361 77.8
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 3.7e-163 578.6 362 79.6
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 4.8e-163 578.2 377 76.9
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 4.8e-163 578.2 320 86.2
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 6.3e-163 577.8 318 85.5
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 6.3e-163 577.8 378 77.0
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.1e-162 577.0 375 77.6
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.1e-162 577.0 378 75.7
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.1e-162 577.0 381 75.6
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.1e-162 577.0 381 75.3
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.8e-162 576.2 382 74.9
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 5.3e-162 574.7 379 75.2
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 5.3e-162 574.7 383 78.6
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 6.9e-162 574.3 377 75.6
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 6.9e-162 574.3 343 80.5
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 9.0e-162 573.9 364 78.0
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.2e-161 573.5 386 76.2
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.2e-161 573.5 386 76.2
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.2e-161 573.5 387 74.4
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.2e-161 573.5 322 84.8
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 1.5e-161 573.2 377 75.6
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 1.5e-161 573.2 365 77.3
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.5e-161 573.2 380 75.3
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 3.4e-161 572.0 363 78.0
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 3.4e-161 572.0 377 75.3
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 4.5e-161 571.6 377 75.3
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 5.9e-161 571.2 381 75.9
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 7.6e-161 570.9 349 78.8
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.3e-160 570.1 379 75.7
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 1.7e-160 569.7 359 78.3
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.7e-160 569.7 365 76.2
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.7e-160 569.7 365 76.2
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 2.2e-160 569.3 391 73.7
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 2.2e-160 569.3 375 76.5
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 2.9e-160 568.9 382 75.4
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 8.5e-160 567.4 371 76.8
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.1e-159 567.0 320 85.0
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 1.4e-159 566.6 380 75.0
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 9.3e-159 563.9 371 76.5
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 2.7e-158 562.4 377 74.3
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 4.6e-158 561.6 320 85.0
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 6.1e-158 561.2 318 84.6
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.3e-157 560.1 377 73.7
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.3e-157 560.1 319 84.3
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 3.0e-157 558.9 372 74.7
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 6.7e-157 557.8 386 73.3
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 8.7e-157 557.4 398 72.1
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 8.7e-157 557.4 346 78.9
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 1.1e-156 557.0 338 80.8
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 2.5e-156 555.8 413 70.2
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 4.3e-156 555.1 404 71.5
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 9.7e-156 553.9 376 72.9
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 6.3e-155 551.2 379 73.6
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 6.3e-155 551.2 327 80.4
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 8.2e-155 550.8 318 83.3
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.1e-154 550.4 285 90.5
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 1.4e-154 550.1 377 73.2
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.8e-154 549.7 374 74.3
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 9.1e-154 547.4 381 73.0
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.5e-153 545.0 279 91.0
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.4e-151 540.0 436 65.6
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 3.2e-151 538.9 287 88.5
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 5.5e-143 511.5 383 68.7
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.1e-140 503.8 332 72.3
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.5e-140 503.4 375 69.1
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.3e-139 500.4 322 73.9
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 1.1e-138 497.3 286 85.0
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 1.4e-138 496.9 475 56.8
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.1e-138 495.7 334 71.9
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 2.2e-136 489.6 532 53.2
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 5.0e-136 488.4 339 69.3
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 4.7e-134 481.9 280 79.6
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.6e-132 476.1 321 73.2
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 5.7e-124 448.4 346 65.9
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 2.7e-121 439.5 220 89.1
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 5.7e-116 421.8 288 68.1
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 9.8e-116 421.0 339 60.2
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.9e-115 418.7 293 73.4
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 1.7e-112 410.2 252 81.0
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.6e-110 403.7 382 59.7
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 5.6e-103 378.6 217 84.3
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 6.0e-97 358.6 295 60.0
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-95 353.6 259 70.7
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.2e-94 350.9 189 85.7
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 4.9e-91 339.0 380 50.3
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.2e-90 334.7 207 76.8
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 1.3e-80 304.3 265 55.1
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.6e-78 297.4 244 66.0
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 5.6e-63 245.7 298 44.3
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 5.3e-61 239.2 288 45.5
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.6e-60 236.9 316 43.0
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.5e-60 236.1 317 41.6
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 1.7e-59 234.2 321 39.9
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.3e-56 223.8 179 64.8
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 8.2e-54 215.3 303 40.6
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.4e-53 214.5 305 40.0
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 2.2e-51 207.2 104 93.3
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 8.2e-46 188.7 155 62.6
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 1.4e-45 188.0 224 42.9
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 9.0e-45 185.3 115 79.1
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 1.7e-30 137.9 92 73.9
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 1.2e-25 121.7 159 46.5
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 3.0e-24 117.1 56 89.3
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.8e-21 107.8 62 85.5
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 5.7e-15 86.3 93 57.0
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 4.8e-14 83.2 69 65.2
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 8.2e-14 82.4 49 75.5
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 5.3e-13 79.7 177 39.0
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 1.0e-11 75.5 33 90.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 1.6e-09 68.2 31 87.1
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 6.3e-06 56.2 31 77.4


User provided reference genes

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