Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 5.0e-97 357.8 189 100.0
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 8.9e-62 240.7 189 72.0
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 4.9e-60 235.0 190 70.5
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.7e-58 229.2 190 66.8
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 7.8e-58 227.6 190 65.8
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.4e-43 180.3 144 66.7
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 7.1e-43 177.9 189 57.1
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 7.1e-43 177.9 192 55.2
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.6e-42 176.8 189 56.6
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 2.1e-42 176.4 144 66.0
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 2.7e-42 176.0 190 54.2
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 4.6e-42 175.3 190 54.2
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 6.0e-42 174.9 188 54.3
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 6.0e-42 174.9 192 54.7
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 7.8e-42 174.5 188 54.3
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.0e-41 174.1 195 53.3
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 2.3e-41 172.9 183 56.8
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 3.0e-41 172.6 192 53.6
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 3.9e-41 172.2 190 54.2
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 5.1e-41 171.8 191 55.0
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 5.1e-41 171.8 195 53.8
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.1e-40 170.6 193 55.4
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.1e-40 170.6 195 53.3
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.1e-40 170.6 195 53.3
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 1.1e-40 170.6 195 54.4
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.5e-40 170.2 194 54.1
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 2.5e-40 169.5 199 54.3
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 4.3e-40 168.7 177 54.8
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.3e-40 168.7 193 53.9
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.3e-40 168.7 193 53.9
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 4.3e-40 168.7 187 55.1
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 5.6e-40 168.3 195 52.8
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 7.3e-40 167.9 180 53.3
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 9.6e-40 167.5 155 60.0
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 9.6e-40 167.5 190 54.2
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.2e-39 167.2 190 54.2
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-39 166.8 155 59.4
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 1.6e-39 166.8 152 60.5
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 2.1e-39 166.4 190 52.6
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 2.1e-39 166.4 184 53.8
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 2.1e-39 166.4 195 53.3
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 2.1e-39 166.4 194 55.7
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 2.8e-39 166.0 189 54.5
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 2.8e-39 166.0 190 54.2
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 3.6e-39 165.6 155 58.7
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 3.6e-39 165.6 189 54.5
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.6e-39 165.6 191 52.9
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 4.7e-39 165.2 189 54.0
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 4.7e-39 165.2 196 54.1
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 4.7e-39 165.2 190 54.2
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 4.7e-39 165.2 190 53.2
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 6.2e-39 164.9 189 52.4
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 8.1e-39 164.5 151 60.9
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 8.1e-39 164.5 190 53.2
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.1e-38 164.1 189 52.4
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.1e-38 164.1 193 52.8
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.4e-38 163.7 171 56.7
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.4e-38 163.7 191 52.4
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 1.8e-38 163.3 177 53.7
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 1.8e-38 163.3 177 53.7
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.8e-38 163.3 190 52.6
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 1.8e-38 163.3 191 52.4
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 2.4e-38 162.9 195 52.3
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 2.4e-38 162.9 147 59.9
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 2.4e-38 162.9 190 53.2
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 2.4e-38 162.9 190 54.2
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 3.1e-38 162.5 187 51.3
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 4.0e-38 162.2 151 59.6
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 4.0e-38 162.2 192 50.0
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 4.0e-38 162.2 191 53.9
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 4.0e-38 162.2 190 52.6
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 4.0e-38 162.2 187 52.4
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 5.3e-38 161.8 151 59.6
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 5.3e-38 161.8 140 62.9
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 5.3e-38 161.8 198 52.0
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 5.3e-38 161.8 191 51.3
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 5.3e-38 161.8 180 53.3
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 5.3e-38 161.8 138 60.9
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 5.3e-38 161.8 189 51.3
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 6.9e-38 161.4 194 51.0
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 6.9e-38 161.4 190 51.1
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 9.0e-38 161.0 147 59.9
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 9.0e-38 161.0 125 66.4
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 9.0e-38 161.0 171 56.1
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.2e-37 160.6 186 53.2
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 1.2e-37 160.6 187 51.3
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.2e-37 160.6 187 52.4
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.2e-37 160.6 185 52.4
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.2e-37 160.6 167 55.7
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 1.5e-37 160.2 158 55.7
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.6e-37 159.5 180 53.9
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.4e-37 159.1 197 51.8
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 3.4e-37 159.1 190 50.5
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 4.4e-37 158.7 177 54.2
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 4.4e-37 158.7 168 57.1
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 4.4e-37 158.7 168 57.1
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 4.4e-37 158.7 168 57.1
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 4.4e-37 158.7 168 57.1
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 4.4e-37 158.7 196 53.6
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 4.4e-37 158.7 187 53.5
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 5.8e-37 158.3 195 53.3
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 7.6e-37 157.9 164 54.9
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 9.9e-37 157.5 168 56.5
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 9.9e-37 157.5 168 56.5
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 1.3e-36 157.1 184 54.3
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 2.9e-36 156.0 186 51.6
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 2.9e-36 156.0 196 51.0
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 2.9e-36 156.0 188 51.1
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 3.8e-36 155.6 190 51.1
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 6.4e-36 154.8 194 51.0
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 6.4e-36 154.8 123 65.9
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.1e-35 154.1 193 48.7
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.1e-35 154.1 188 51.1
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.4e-35 153.7 124 64.5
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.9e-35 153.3 198 49.0
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 1.9e-35 153.3 184 51.1
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 3.2e-35 152.5 198 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 4.2e-35 152.1 168 53.6
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 4.2e-35 152.1 168 54.8
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 4.2e-35 152.1 122 63.1
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 4.2e-35 152.1 122 63.1
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 7.1e-35 151.4 203 52.2
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 7.1e-35 151.4 178 50.6
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 9.3e-35 151.0 194 50.5
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 9.3e-35 151.0 122 63.1
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.6e-34 150.2 192 51.6
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.1e-34 149.8 209 47.4
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 2.1e-34 149.8 120 64.2
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 2.7e-34 149.4 194 50.5
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 3.5e-34 149.1 194 50.0
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 7.8e-34 147.9 147 56.5
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.0e-33 147.5 220 43.6
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 1.3e-33 147.1 166 50.0
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 3.0e-33 146.0 124 60.5
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.1e-32 144.1 182 50.5
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 2.5e-32 142.9 166 53.6
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 5.6e-32 141.7 171 52.6
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.6e-31 140.2 160 53.8
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 4.8e-31 138.7 171 48.5
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 8.1e-31 137.9 228 43.0
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.8e-30 136.7 145 53.8
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 6.9e-30 134.8 123 53.7
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 9.0e-30 134.4 176 47.2
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 7.6e-29 131.3 188 48.9
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 9.9e-29 131.0 123 54.5
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 1.3e-28 130.6 151 55.0
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.7e-28 130.2 135 55.6
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 6.4e-28 128.3 123 54.5
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 1.9e-27 126.7 166 49.4
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 5.4e-27 125.2 91 69.2
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 3.5e-26 122.5 156 49.4
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 4.6e-26 122.1 137 52.6
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 6.0e-26 121.7 156 48.7
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 6.0e-26 121.7 188 43.6
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.0e-25 120.9 102 60.8
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.6e-23 113.6 149 51.0
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.2e-21 107.5 136 50.0
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.5e-21 107.1 74 67.6
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.3e-20 104.0 101 53.5
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 9.6e-16 87.8 71 66.2
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 3.4e-13 79.3 70 61.4
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.3e-12 77.4 70 60.0
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 2.9e-12 76.3 114 47.4
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.9e-12 76.3 115 44.3
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 3.8e-12 75.9 119 46.2
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 6.5e-12 75.1 114 46.5
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 1.9e-11 73.6 70 50.0
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 2.7e-10 69.7 50 62.0
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 3.5e-10 69.3 49 65.3
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 6.1e-10 68.6 52 61.5
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 6.1e-10 68.6 50 60.0
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 3.9e-09 65.9 123 35.8
Cfa023258 Carpinus fangiana HOM05D003917 ORTHO05D126232 3.7e-07 59.3 120 32.5
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 3.1e-06 56.2 34 76.5
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 5.3e-06 55.5 34 76.5
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 5.3e-06 55.5 34 76.5
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 5.3e-06 55.5 49 59.2


User provided reference genes

Program Settings