Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 0.0e+00 1482.2 1027 100.0
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 1.5e-275 953.4 897 76.5
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 3.3e-275 952.2 906 76.8
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 1.5e-251 873.6 1187 57.8
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 1.4e-230 803.9 1047 66.6
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.8e-217 760.4 619 74.0
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 5.8e-216 755.4 622 74.0
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 3.8e-215 752.7 610 77.5
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 4.9e-215 752.3 624 72.3
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 1.1e-214 751.1 622 74.6
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 5.1e-212 742.3 573 78.2
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 7.9e-205 718.4 575 73.0
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.5e-203 714.1 621 70.5
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 7.4e-203 711.8 638 69.4
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 8.2e-202 708.4 600 70.2
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 1.4e-201 707.6 618 71.7
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 4.1e-201 706.1 582 73.5
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 6.9e-201 705.3 630 70.2
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 3.4e-200 703.0 623 69.2
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 1.3e-199 701.0 619 69.8
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 6.5e-199 698.7 642 67.4
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 6.5e-199 698.7 652 71.9
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.4e-198 697.6 612 69.9
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 5.5e-198 695.7 607 68.2
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 7.2e-198 695.3 622 70.7
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 3.6e-197 693.0 624 70.0
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 4.6e-197 692.6 638 72.9
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 6.1e-197 692.2 622 69.5
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.4e-196 691.0 652 71.3
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.8e-196 690.6 626 67.6
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 2.3e-196 690.3 645 67.1
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.0e-196 689.9 626 67.6
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 6.7e-196 688.7 619 69.6
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 7.4e-195 685.3 625 66.2
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 8.2e-194 681.8 622 67.7
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 1.8e-193 680.6 613 72.3
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 2.4e-193 680.2 612 67.3
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 1.5e-192 677.6 618 68.0
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.3e-191 674.5 608 66.8
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 2.2e-191 673.7 627 66.7
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 2.9e-191 673.3 627 71.5
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 5.0e-191 672.5 493 77.7
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 6.5e-191 672.2 624 66.3
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 6.5e-191 672.2 621 70.7
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.4e-190 671.0 621 70.5
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.4e-190 671.0 640 65.8
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.9e-190 670.6 621 70.7
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 5.5e-190 669.1 621 70.5
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.6e-189 667.5 636 64.8
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 2.7e-189 666.8 603 66.8
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.7e-189 666.8 651 61.3
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 3.6e-189 666.4 575 69.6
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.7e-189 666.0 652 69.6
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 1.8e-188 664.1 615 67.6
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 2.3e-188 663.7 625 64.8
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.3e-188 663.7 639 65.4
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 5.1e-188 662.5 637 65.1
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 6.7e-188 662.1 573 68.2
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 8.8e-188 661.8 640 67.0
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.0e-187 660.6 622 68.3
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 5.7e-187 659.1 615 63.7
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 1.7e-186 657.5 635 65.8
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 3.7e-186 656.4 601 68.4
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 4.8e-186 656.0 620 67.4
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 4.1e-185 652.9 618 68.4
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 5.3e-185 652.5 571 69.0
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 1.9e-182 644.0 642 61.5
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 7.2e-182 642.1 588 66.5
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 6.3e-178 629.0 608 70.1
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 8.2e-178 628.6 606 65.7
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 9.1e-177 625.2 618 60.7
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.2e-176 624.8 625 65.4
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 5.9e-176 622.5 600 68.3
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 3.8e-175 619.8 626 63.6
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 9.4e-174 615.1 631 62.4
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 1.2e-173 614.8 631 62.6
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 2.7e-173 613.6 628 62.3
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 2.7e-173 613.6 622 62.5
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 3.6e-173 613.2 628 64.5
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 4.7e-173 612.8 631 62.4
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 4.7e-173 612.8 620 63.7
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.5e-171 607.8 608 63.5
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 4.4e-171 606.3 586 62.6
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 1.3e-170 604.7 626 62.9
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 1.3e-167 594.7 526 65.2
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 6.5e-167 592.4 644 59.2
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 2.5e-166 590.5 526 65.0
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 1.4e-164 584.7 635 64.7
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 1.5e-163 581.3 631 60.7
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 7.5e-163 578.9 634 63.7
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 3.7e-162 576.6 604 60.9
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 3.7e-162 576.6 633 57.7
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 3.7e-162 576.6 633 57.7
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.1e-161 575.1 633 57.5
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.2e-160 571.6 639 59.8
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.7e-160 570.5 503 67.0
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 2.3e-156 557.4 503 66.6
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 8.3e-154 548.9 614 58.6
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 9.2e-153 545.4 541 63.2
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 1.7e-151 541.2 637 58.2
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 1.8e-132 478.0 457 69.4
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 1.6e-125 454.9 441 73.7
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 1.7e-122 444.9 621 53.9
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.3e-119 435.3 607 52.7
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 6.6e-119 433.0 545 58.2
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 7.1e-113 412.9 284 72.2
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 9.9e-107 392.5 289 67.8
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.0e-87 329.3 205 75.1
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.9e-86 325.1 543 48.3
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 6.9e-84 316.6 609 44.2
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.7e-77 295.4 283 68.6
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 2.4e-76 291.6 515 49.9
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 1.8e-71 275.4 177 78.5
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.9e-71 274.2 611 45.7
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 1.8e-68 265.4 333 57.7
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.2e-67 262.7 279 66.3
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 2.2e-66 258.5 499 42.7
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 8.5e-66 256.5 236 56.4
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 9.7e-62 243.0 340 52.6
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 1.8e-60 238.8 278 59.0
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 6.5e-58 230.3 179 66.5
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 1.7e-53 215.7 210 64.8
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.1e-23 116.7 141 53.2
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 1.1e-23 116.7 69 81.2
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 1.7e-21 109.4 58 89.7
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 3.2e-20 105.1 88 55.7
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 5.4e-20 104.4 85 61.2
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 9.5e-17 93.6 98 53.1
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 1.6e-16 92.8 87 64.4
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 2.8e-16 92.0 421 37.5
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 2.8e-16 92.0 421 25.7
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 4.7e-16 91.3 94 56.4
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 2.4e-15 89.0 255 40.0
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 7.6e-14 84.0 98 51.0
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 2.1e-11 75.9 86 67.4
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 2.3e-10 72.4 155 39.4
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 7.3e-09 67.4 249 35.7
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 8.1e-08 63.9 95 54.7
Mapoly0001s0473 Marchantia polymorpha HOM05D042108 ORTHO05D048733 2.6e-06 58.9 189 43.4
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 7.6e-06 57.4 87 39.1
Gohir.A04G047000 Gossypium hirsutum HOM05D001023 ORTHO05D000912 7.6e-06 57.4 87 37.9
Gohir.D05G333200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 7.6e-06 57.4 87 37.9
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 7.6e-06 57.4 87 39.1
Gorai.009G358300 Gossypium raimondii HOM05D001023 ORTHO05D000912 7.6e-06 57.4 87 37.9
arahy.Tifrunner.gnm1.ann1.6FDN0X Arachis hypogaea HOM05D001023 ORTHO05D000912 9.9e-06 57.0 87 39.1
arahy.Tifrunner.gnm1.ann1.8WSJ5E Arachis hypogaea HOM05D001023 ORTHO05D000912 9.9e-06 57.0 87 39.1


User provided reference genes

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