Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 2109.3 1053 100.0
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1888.2 1054 89.1
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1857.4 1054 87.7
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1835.1 1054 86.7
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1553.1 1054 72.6
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1541.9 1057 72.1
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1541.6 1054 72.2
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1539.6 1057 72.5
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1538.9 1054 72.1
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1533.9 1053 72.2
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1526.9 1054 71.7
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1525.4 1057 72.5
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1522.3 1056 71.2
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1513.0 1054 70.8
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1508.8 1057 70.1
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1505.7 1053 71.0
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1503.8 1055 71.4
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1500.0 1055 71.0
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1495.3 1053 70.0
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1493.0 1054 70.3
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1488.4 1053 70.6
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1488.0 1057 69.6
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1483.8 1057 69.9
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1481.5 1055 70.0
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1479.9 1055 70.2
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1478.4 1054 70.2
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1477.2 1054 69.6
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1475.7 1056 68.5
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1472.2 1055 69.6
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1469.1 1054 69.5
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1467.6 1061 68.7
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1464.9 1054 69.2
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1463.7 1145 65.3
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1460.7 1053 69.3
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1455.3 1120 66.1
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1454.1 1073 68.3
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1453.7 1039 70.2
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1452.2 1073 68.2
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1449.5 1054 69.0
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1448.7 1057 68.0
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1447.2 1055 68.1
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1443.7 1141 65.2
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1434.5 1061 67.7
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1432.9 1061 67.6
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1432.9 1057 68.9
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1431.8 1053 69.2
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1431.8 1054 67.1
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1431.8 1054 68.7
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1430.6 1058 67.3
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1429.1 1047 68.4
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1429.1 1056 68.5
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1426.8 1052 67.3
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1424.1 1041 68.2
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1423.7 1053 67.6
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1421.8 1059 66.8
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1420.2 1056 66.2
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1417.1 1054 68.8
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1416.4 1055 66.6
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1414.4 1055 66.7
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1412.9 1055 65.8
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1409.0 1062 66.9
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1402.5 1056 66.0
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1399.8 1055 66.4
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1393.3 1056 65.7
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1392.1 960 72.4
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1391.3 1056 65.6
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1390.2 1057 67.1
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1386.7 1049 67.4
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1382.5 1056 65.9
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1380.2 1054 66.2
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1378.2 1054 65.9
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1377.8 1057 65.0
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1374.4 1054 65.7
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1370.5 1053 66.7
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1369.4 1094 63.3
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1369.4 1055 65.3
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1368.2 1131 62.7
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1359.0 977 68.9
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1358.6 1060 65.4
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1356.7 1063 65.5
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1353.6 1061 64.0
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1349.0 1065 63.3
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1342.0 1066 63.4
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1342.0 1059 63.6
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1334.3 1264 55.9
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1318.1 946 70.3
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1238.8 854 71.8
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1228.8 1053 60.0
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1225.3 844 71.7
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1188.7 848 68.6
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1182.9 801 73.4
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1090.5 790 67.8
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 2.3e-308 1062.4 1079 51.9
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 1.0e-303 1047.0 958 57.7
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.2e-296 1023.5 1060 50.9
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 2.7e-293 1012.3 790 64.3
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 7.2e-278 961.1 1072 49.2
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 3.7e-258 895.6 784 58.7
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 6.1e-253 878.2 632 70.7
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 4.6e-240 835.5 949 50.4
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.3e-231 806.6 518 76.1
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 1.1e-230 804.3 657 61.3
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 9.8e-227 791.2 517 72.3
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 3.3e-206 723.0 481 71.7
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 1.6e-205 720.7 448 75.4
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 2.1e-205 720.3 448 75.4
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 2.6e-203 713.4 470 71.7
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 2.6e-203 713.4 453 74.6
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 1.1e-198 698.0 450 72.9
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 3.3e-198 696.4 496 68.1
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.8e-197 693.3 698 52.6
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 3.1e-196 689.9 446 72.9
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 9.3e-193 678.3 449 72.8
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 1.4e-188 664.5 452 70.6
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 5.8e-187 659.1 451 69.0
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 1.9e-182 644.0 471 66.5
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 3.7e-165 586.6 449 65.0
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 2.2e-162 577.4 461 62.5
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 2.5e-161 573.9 450 62.4
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 4.2e-161 573.2 428 66.4
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 1.5e-150 538.1 366 70.5
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 1.5e-150 538.1 400 67.5
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.7e-146 524.6 406 65.5
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 2.5e-145 520.8 366 69.1
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 8.3e-141 505.8 613 48.0
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 1.5e-134 485.0 1114 31.3
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 3.4e-118 430.6 267 77.9
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 2.9e-109 401.0 238 81.5
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 2.3e-106 391.3 286 67.8
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.0e-106 391.0 271 72.7
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.9e-101 374.4 238 75.6
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 6.6e-98 363.2 237 76.8
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 8.6e-98 362.8 266 69.9
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 2.5e-97 361.3 213 81.7
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 4.4e-94 350.5 319 57.7
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 2.9e-69 268.1 156 79.5
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 1.6e-59 235.7 210 57.6
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 5.3e-55 220.7 209 57.9
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 1.0e-53 216.5 291 41.9
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 1.9e-44 185.7 159 59.1
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 5.5e-44 184.1 121 68.6
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 6.1e-43 180.6 155 60.0
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 8.8e-42 176.8 182 53.8
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 3.3e-41 174.9 182 52.7
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 1.5e-33 149.4 109 67.0
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 5.9e-30 137.5 106 67.0
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 8.5e-29 133.7 96 67.7
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 1.8e-26 125.9 88 64.8
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 2.6e-25 122.1 85 61.2
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 1.7e-24 119.4 138 46.4
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 1.8e-23 115.9 138 45.7
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 5.9e-22 110.9 54 92.6
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 7.7e-22 110.5 117 49.6
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 7.2e-20 104.0 117 47.9
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 3.6e-19 101.7 87 59.8
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 6.1e-19 100.9 85 61.2
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 1.8e-18 99.4 62 75.8
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 1.7e-16 92.8 83 51.8
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 1.4e-15 89.7 58 63.8
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 1.8e-15 89.4 74 62.2
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 2.0e-14 85.9 56 66.1
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 3.3e-12 78.6 53 71.7
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 7.3e-12 77.4 74 55.4
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 9.5e-12 77.0 77 55.8
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 3.4e-09 68.6 71 54.9
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 9.8e-09 67.0 36 77.8
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 2.2e-08 65.9 41 65.9
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 6.4e-08 64.3 44 68.2
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 1.1e-07 63.5 49 63.3
AUR62036524 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.2e-06 60.1 47 59.6


User provided reference genes

Program Settings