Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 0.0e+00 1278.5 653 100.0
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 0.0e+00 1088.6 596 93.8
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 0.0e+00 1082.8 595 93.3
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 0.0e+00 1080.1 596 92.8
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 0.0e+00 1075.5 596 92.3
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 1.3e-280 969.5 595 82.9
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 8.4e-277 956.8 591 82.6
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 1.6e-275 952.6 619 79.2
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 3.5e-275 951.4 595 81.7
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.9e-273 945.7 599 80.6
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 3.3e-273 944.9 599 81.0
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 4.3e-273 944.5 601 81.0
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 3.7e-272 941.4 592 80.6
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 1.1e-271 939.9 615 79.0
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 1.8e-271 939.1 592 81.2
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 2.4e-271 938.7 599 79.8
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 4.0e-271 937.9 593 80.1
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.5e-270 936.0 607 79.6
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 2.6e-270 935.3 596 79.9
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 7.6e-270 933.7 595 79.7
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.1e-268 929.9 593 80.3
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.6e-267 926.0 596 80.2
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.6e-267 924.5 596 79.4
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.3e-266 922.9 597 79.6
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 3.9e-266 921.4 640 75.3
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 6.7e-266 920.6 596 79.2
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 8.7e-266 920.2 594 79.1
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 5.6e-265 917.5 597 78.7
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 7.4e-265 917.1 595 79.0
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 7.4e-265 917.1 600 77.7
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 2.1e-264 915.6 567 81.5
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 8.2e-264 913.7 592 79.1
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.1e-263 913.3 593 78.4
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 3.1e-263 911.8 592 78.2
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 9.0e-263 910.2 596 79.0
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.4e-262 908.3 593 78.6
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 7.6e-262 907.1 593 78.2
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 2.2e-261 905.6 597 77.6
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 4.9e-261 904.4 593 78.1
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 6.5e-261 904.0 596 77.7
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 8.4e-261 903.7 607 76.8
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 8.4e-261 903.7 596 78.4
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 4.2e-260 901.4 597 77.2
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 5.5e-260 901.0 641 73.6
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 7.1e-260 900.6 594 78.8
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 2.7e-259 898.7 601 76.4
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 4.6e-259 897.9 601 76.4
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 1.8e-258 896.0 600 78.2
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.5e-257 892.9 619 76.3
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 4.3e-257 891.3 600 76.5
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 7.4e-257 890.6 601 75.9
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 9.7e-257 890.2 600 76.2
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.8e-256 888.6 597 75.9
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 8.2e-256 887.1 599 76.3
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 1.1e-255 886.7 597 76.2
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.1e-255 886.7 600 76.2
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.4e-255 886.3 599 75.3
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.4e-255 886.3 595 76.6
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.4e-255 886.3 598 75.8
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 5.3e-255 884.4 600 75.3
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.9e-255 884.0 634 72.9
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 1.5e-254 882.9 601 75.4
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.5e-254 882.9 601 75.4
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.0e-253 880.2 598 75.1
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 1.0e-253 880.2 656 70.4
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 2.2e-253 879.0 590 78.0
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 2.9e-253 878.6 615 73.7
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 5.0e-253 877.9 601 74.7
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 8.5e-253 877.1 601 74.9
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 8.5e-253 877.1 599 75.8
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 8.5e-253 877.1 599 75.6
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 1.1e-252 876.7 598 74.2
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 1.1e-252 876.7 598 74.2
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 1.1e-252 876.7 598 74.2
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.1e-252 876.7 596 75.0
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.4e-252 876.3 598 74.2
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 3.2e-252 875.2 598 74.1
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 4.2e-252 874.8 681 68.6
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 5.5e-252 874.4 595 74.8
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 5.5e-252 874.4 596 75.2
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 5.5e-252 874.4 599 75.6
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 5.5e-252 874.4 597 75.9
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 7.2e-252 874.0 596 75.7
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 9.4e-252 873.6 598 74.6
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.2e-251 873.2 596 75.2
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.6e-251 872.8 591 75.3
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 2.1e-251 872.5 598 75.9
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.5e-249 866.3 592 76.4
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 3.3e-249 865.1 598 74.2
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 8.2e-248 860.5 593 74.7
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.1e-247 860.1 597 74.0
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.2e-246 856.7 590 74.7
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 2.0e-246 855.9 595 71.8
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 7.7e-246 854.0 549 79.8
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.9e-244 849.4 565 78.4
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 5.1e-242 841.3 566 76.7
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 5.7e-241 837.8 618 71.0
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 5.7e-241 837.8 594 72.7
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.3e-240 836.6 594 72.6
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.2e-240 835.9 552 77.7
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 2.6e-238 828.9 598 74.4
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 8.5e-237 823.9 557 75.4
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 1.4e-234 816.6 551 76.4
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 1.1e-231 807.0 612 69.1
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.4e-231 805.8 586 73.0
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 9.1e-231 803.9 586 72.5
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 4.8e-224 781.6 637 66.4
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 2.7e-222 775.8 652 63.0
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 5.5e-220 768.1 597 68.0
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 4.4e-217 758.4 474 81.6
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.4e-215 753.4 607 66.1
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 2.4e-215 752.7 597 65.3
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 7.0e-215 751.1 503 77.1
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 1.0e-213 747.3 598 63.9
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 4.0e-210 735.3 497 76.5
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 8.3e-208 727.6 474 77.8
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.9e-192 676.0 545 67.5
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.6e-187 660.2 422 78.9
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 8.1e-179 631.3 504 67.9
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.4e-175 620.5 596 54.4
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 7.1e-175 618.2 441 73.7
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 4.0e-170 602.4 598 53.2
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 2.0e-169 600.1 586 53.1
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 1.6e-155 553.9 438 64.8
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 1.2e-145 521.2 320 82.2
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 8.4e-144 515.0 605 46.0
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 2.5e-140 503.4 367 72.8
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.0e-133 481.5 578 45.8
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 3.1e-130 469.9 419 60.1
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-124 451.4 524 51.5
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 4.8e-123 446.0 283 79.9
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.0e-120 436.0 335 69.6
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.4e-114 417.9 242 83.5
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 1.6e-102 377.9 280 72.5
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 6.1e-102 375.9 436 49.5
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 7.3e-87 325.9 317 58.0
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.4e-85 321.6 273 64.5
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.7e-75 287.0 657 31.5
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 7.8e-73 279.3 180 77.8
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 1.3e-72 278.5 556 34.4
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 2.6e-60 237.7 149 77.9
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 2.6e-60 237.7 140 85.0
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 3.8e-59 233.8 183 69.4
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.1e-46 189.5 149 67.8
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.5e-44 183.7 120 77.5
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 1.6e-41 175.3 614 27.4
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 7.1e-34 149.8 96 76.0
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.3e-30 139.0 120 55.0
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.0e-27 129.4 185 39.5
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 6.5e-27 126.7 98 66.3
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 5.1e-24 117.1 70 75.7
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.1e-23 115.9 98 58.2
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.8e-22 111.3 66 80.3
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 3.8e-19 100.9 69 62.3
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 4.2e-18 97.4 78 59.0
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 4.6e-17 94.0 638 22.7
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 3.9e-16 90.9 49 85.7
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 2.5e-15 88.2 48 85.4
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 8.2e-14 83.2 71 53.5
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 3.1e-13 81.3 193 33.7
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 5.9e-12 77.0 95 46.3
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 4.7e-09 67.4 46 71.7
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 4.7e-09 67.4 46 71.7
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 3.0e-08 64.7 53 62.3
Os08g0323266 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D026010 7.4e-07 60.1 46 65.2


User provided reference genes

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