Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 5.3e-148 527.7 254 100.0
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 5.7e-86 321.6 254 68.1
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 7.3e-81 304.7 223 70.9
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 1.1e-63 247.7 253 53.0
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 4.6e-59 232.3 226 53.5
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 9.6e-57 224.6 220 51.4
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 9.6e-57 224.6 199 56.3
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 6.2e-56 221.9 227 47.6
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 1.4e-55 220.7 196 56.6
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.4e-55 220.7 238 50.0
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 6.9e-55 218.4 237 51.1
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 1.2e-54 217.6 174 65.5
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 2.0e-54 216.9 249 48.2
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 3.4e-54 216.1 261 47.5
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 1.6e-51 207.2 229 45.9
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 1.3e-50 204.1 173 55.5
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 3.9e-50 202.6 245 47.8
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 5.6e-49 198.7 174 53.4
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.3e-48 197.6 175 55.4
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 6.2e-48 195.3 220 46.4
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.4e-47 194.1 194 51.5
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 1.4e-47 194.1 190 52.6
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 6.9e-47 191.8 244 43.0
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.0e-46 190.3 214 44.4
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 7.6e-46 188.3 196 50.5
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 1.3e-45 187.6 195 51.3
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 1.7e-45 187.2 238 45.0
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 6.4e-45 185.3 230 43.5
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 1.4e-44 184.1 192 47.4
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 2.4e-44 183.3 221 46.2
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 3.2e-44 183.0 196 49.5
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 7.1e-44 181.8 160 51.9
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.2e-43 181.0 131 61.8
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 7.9e-43 178.3 131 61.1
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 1.1e-41 174.5 201 45.8
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.5e-41 174.1 161 49.1
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 3.3e-41 172.9 198 45.5
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 7.4e-41 171.8 191 45.5
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 7.4e-41 171.8 191 45.5
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 9.6e-41 171.4 194 47.4
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.3e-40 171.0 197 46.2
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 1.6e-40 170.6 196 45.9
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 2.1e-40 170.2 196 45.9
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 3.1e-39 166.4 115 65.2
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 5.3e-39 165.6 154 53.2
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 6.9e-39 165.2 189 47.6
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 3.8e-37 159.5 176 43.8
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 7.1e-36 155.2 221 39.8
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.2e-35 154.5 127 55.1
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 3.7e-32 142.9 202 44.1
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 8.2e-32 141.7 244 37.7
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 3.1e-31 139.8 250 37.6
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 9.0e-31 138.3 187 44.9
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 1.7e-29 134.0 153 44.4
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 6.5e-29 132.1 164 44.5
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 1.4e-28 131.0 212 34.9
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 4.2e-28 129.4 219 36.1
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 9.3e-28 128.3 178 41.0
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 1.2e-27 127.9 201 40.3
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 9.7e-25 118.2 179 38.5
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 2.2e-24 117.1 149 40.9
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.8e-24 116.7 119 46.2
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 7.6e-22 108.6 137 40.1
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 3.2e-20 103.2 148 35.1
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 9.3e-20 101.7 171 34.5
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 2.1e-19 100.5 180 33.9
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.7e-19 100.1 152 35.5
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 4.6e-19 99.4 145 36.6
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 4.6e-19 99.4 148 35.8
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 7.9e-19 98.6 148 34.5
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 1.4e-18 97.8 148 34.5
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 2.3e-18 97.1 122 42.6
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 3.9e-18 96.3 138 39.9
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 5.1e-18 95.9 154 32.5
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 6.7e-18 95.5 132 38.6
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 6.7e-18 95.5 70 64.3
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 6.7e-18 95.5 70 64.3
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 8.8e-18 95.1 151 35.8
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 1.1e-17 94.7 148 33.8
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 1.1e-17 94.7 148 33.8
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.9e-17 94.0 132 37.1
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 1.9e-17 94.0 165 33.9
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 5.7e-17 92.4 169 36.1
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 7.4e-17 92.0 141 34.8
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 9.7e-17 91.7 151 37.1
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 1.3e-16 91.3 172 36.0
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 1.3e-16 91.3 172 36.0
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 1.3e-16 91.3 172 36.0
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.7e-16 90.9 137 35.8
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 2.2e-16 90.5 132 35.6
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 2.2e-16 90.5 168 34.5
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 6.3e-16 89.0 169 34.3
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 2.4e-15 87.0 153 35.3
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 3.1e-15 86.7 168 31.5
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 4.1e-15 86.3 155 32.3
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 6.9e-15 85.5 139 31.7
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 9.1e-15 85.1 141 31.9
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 3.4e-14 83.2 136 33.8
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 3.4e-14 83.2 142 35.9
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 7.7e-14 82.0 146 34.2
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 2.2e-13 80.5 141 34.8
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 2.2e-13 80.5 135 33.3
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 3.8e-13 79.7 123 36.6
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 5.0e-13 79.3 96 41.7
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 5.0e-13 79.3 109 38.5
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 6.5e-13 79.0 163 35.0
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 1.1e-12 78.2 96 39.6
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 2.5e-12 77.0 207 30.0
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 3.2e-12 76.6 100 36.0
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 4.2e-12 76.3 132 34.8
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 5.5e-12 75.9 144 32.6
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 5.5e-12 75.9 165 26.7
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 5.5e-12 75.9 172 30.2
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 7.2e-12 75.5 132 34.1
Gorai.001G196100 Gossypium raimondii HOM05D018961 ORTHO05D004072 9.4e-12 75.1 171 28.7
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 9.4e-12 75.1 177 31.1
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.2e-11 74.7 81 43.2
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 1.2e-11 74.7 177 31.1
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 1.2e-11 74.7 155 27.7
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 2.7e-11 73.6 129 33.3
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 3.6e-11 73.2 207 27.5
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 3.6e-11 73.2 165 26.1
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 4.7e-11 72.8 165 26.1
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 4.7e-11 72.8 152 31.6
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 4.7e-11 72.8 140 32.9
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 6.1e-11 72.4 126 33.3
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 3.0e-10 70.1 144 31.9
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 1.5e-09 67.8 211 28.9
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 4.8e-08 62.8 141 34.8
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 4.8e-08 62.8 135 31.1
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 6.3e-08 62.4 76 35.5
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 1.1e-07 61.6 100 34.0
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 2.4e-07 60.5 125 32.0
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 2.4e-07 60.5 91 37.4
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 4.1e-07 59.7 50 48.0
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 9.1e-07 58.5 100 33.0
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 1.2e-06 58.2 74 44.6
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 1.5e-06 57.8 96 37.5
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 2.6e-06 57.0 99 33.3
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 2.6e-06 57.0 110 31.8
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 3.4e-06 56.6 110 31.8
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.5e-06 56.2 61 45.9
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 5.9e-06 55.8 165 26.7
HPP92_005917 Vanilla planifolia HOM05D002182 ORTHO05D004671 5.9e-06 55.8 88 38.6
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 7.7e-06 55.5 95 31.6
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 7.7e-06 55.5 100 36.0
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 7.7e-06 55.5 109 32.1
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 7.7e-06 55.5 119 30.3
Nitab4.5_0001277g0010 Nicotiana tabacum HOM05D002182 ORTHO05D004671 7.7e-06 55.5 148 30.4
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 7.7e-06 55.5 93 34.4


User provided reference genes

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