Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 3.6e-38 161.0 77 100.0
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 1.1e-29 132.9 64 100.0
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 1.4e-29 132.5 68 94.1
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 4.0e-29 131.0 63 100.0
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 2.6e-28 128.3 68 88.2
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 7.6e-28 126.7 68 86.8
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 7.6e-28 126.7 68 86.8
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 2.9e-27 124.8 68 88.2
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 4.2e-26 120.9 71 78.9
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 5.5e-26 120.6 68 79.4
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 5.5e-26 120.6 68 79.4
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 7.1e-26 120.2 68 80.9
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 2.1e-25 118.6 71 76.1
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 6.0e-25 117.1 63 85.7
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 6.0e-25 117.1 68 80.9
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 3.0e-24 114.8 63 81.0
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 3.9e-24 114.4 68 77.9
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 3.9e-24 114.4 68 77.9
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 3.9e-24 114.4 68 76.5
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 3.9e-24 114.4 68 77.9
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 5.1e-24 114.0 68 76.5
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 5.1e-24 114.0 68 77.9
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 6.7e-24 113.6 68 77.9
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 1.1e-23 112.8 63 81.0
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 1.5e-23 112.5 68 75.0
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 1.5e-23 112.5 68 75.0
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 1.5e-23 112.5 68 75.0
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.5e-23 112.5 68 75.0
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.5e-23 112.5 68 75.0
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 1.5e-23 112.5 68 75.0
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 1.9e-23 112.1 68 76.5
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 2.5e-23 111.7 68 75.0
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 2.5e-23 111.7 68 76.5
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 3.3e-23 111.3 68 75.0
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 3.3e-23 111.3 68 73.5
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 4.3e-23 110.9 68 75.0
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 4.3e-23 110.9 68 75.0
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 5.7e-23 110.5 68 76.5
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 5.7e-23 110.5 63 82.5
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 7.4e-23 110.2 63 79.4
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 7.4e-23 110.2 63 81.0
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 9.6e-23 109.8 63 79.4
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 1.6e-22 109.0 68 72.1
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 1.6e-22 109.0 68 72.1
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 3.7e-22 107.8 64 79.7
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 4.8e-22 107.5 63 76.2
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 4.8e-22 107.5 63 77.8
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 4.8e-22 107.5 70 70.0
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 6.3e-22 107.1 69 72.5
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 8.2e-22 106.7 84 63.1
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 8.2e-22 106.7 68 73.5
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 1.1e-21 106.3 68 73.5
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 1.1e-21 106.3 68 75.0
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 1.1e-21 106.3 63 81.0
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 1.4e-21 105.9 63 76.2
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.8e-21 105.5 63 76.2
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.8e-21 105.5 63 76.2
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 3.1e-21 104.8 68 75.0
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 3.1e-21 104.8 63 73.0
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.1e-21 104.8 63 76.2
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.1e-21 104.8 63 76.2
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 3.1e-21 104.8 63 74.6
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 4.1e-21 104.4 63 71.4
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.1e-21 104.4 70 68.6
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 6.9e-21 103.6 68 75.0
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 6.9e-21 103.6 63 74.6
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 6.9e-21 103.6 63 73.0
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 9.0e-21 103.2 69 68.1
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 9.0e-21 103.2 68 75.0
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 9.0e-21 103.2 68 69.1
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 9.0e-21 103.2 71 67.6
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 2.6e-20 101.7 69 69.6
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 5.9e-20 100.5 65 76.9
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 5.9e-20 100.5 64 75.0
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 1.0e-19 99.8 69 66.7
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 6.5e-19 97.1 63 68.3
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 6.5e-19 97.1 76 67.1
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 1.1e-18 96.3 67 67.2
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 1.9e-18 95.5 63 68.3
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 2.5e-18 95.1 65 64.6
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 2.5e-18 95.1 76 65.8
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 7.2e-18 93.6 79 62.0
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 1.6e-17 92.4 62 69.4
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 2.1e-17 92.0 62 66.1
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 2.7e-17 91.7 63 69.8
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 2.7e-17 91.7 62 69.4
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 2.7e-17 91.7 62 69.4
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 4.6e-17 90.9 63 63.5
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 6.1e-17 90.5 62 67.7
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 6.1e-17 90.5 62 67.7
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 6.1e-17 90.5 54 77.8
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 7.9e-17 90.1 63 63.5
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 1.0e-16 89.7 63 66.7
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.0e-16 89.7 68 66.2
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 3.3e-15 84.7 62 62.9
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 3.3e-15 84.7 60 66.7
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 7.4e-15 83.6 63 63.5
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 4.8e-14 80.9 66 59.1
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 1.1e-13 79.7 64 56.2
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 2.0e-12 75.5 65 55.4
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 3.4e-12 74.7 63 63.5
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 3.8e-11 71.2 36 80.6
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 2.5e-10 68.6 61 54.1
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 4.2e-10 67.8 41 65.9
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 5.5e-10 67.4 39 71.8
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 5.5e-10 67.4 39 71.8
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 7.2e-10 67.0 38 73.7
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 2.3e-08 62.0 41 63.4
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 8.8e-08 60.1 68 45.6
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 1.7e-06 55.8 66 45.5
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 2.2e-06 55.5 66 45.5


User provided reference genes

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