Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 2.7e-248 862.1 624 100.0
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 2.5e-230 802.4 624 91.5
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 1.5e-227 793.1 616 91.4
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 1.3e-223 780.0 624 86.4
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 3.7e-181 639.0 635 66.3
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 3.8e-178 629.0 645 67.6
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 5.2e-175 618.6 637 70.3
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 2.6e-174 616.3 632 66.1
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 5.0e-170 602.1 637 63.6
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 1.4e-167 594.0 432 77.3
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 6.8e-167 591.7 647 62.0
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 4.4e-166 589.0 636 63.1
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 6.3e-165 585.1 435 76.8
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 8.3e-165 584.7 628 69.3
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 7.0e-164 581.6 638 61.3
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.5e-161 573.9 643 60.3
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 1.9e-161 573.5 436 76.1
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 2.5e-161 573.2 436 75.9
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.3e-161 572.4 643 60.5
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 5.6e-161 572.0 630 71.1
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 7.3e-161 571.6 640 60.2
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 1.2e-160 570.9 631 64.8
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 1.6e-160 570.5 432 74.8
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.1e-160 570.1 643 60.0
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 5.8e-158 562.0 501 70.3
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 3.7e-157 559.3 635 66.1
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 4.9e-157 558.9 632 61.2
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 1.1e-156 557.8 538 61.7
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.4e-156 557.4 550 59.5
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 1.4e-156 557.4 430 72.6
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 4.1e-156 555.8 640 60.0
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 4.1e-156 555.8 434 70.7
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 6.0e-155 552.0 434 70.5
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 7.8e-155 551.6 473 64.3
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 5.0e-154 548.9 530 60.8
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 5.0e-154 548.9 632 63.4
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 1.1e-153 547.7 433 72.5
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 1.5e-153 547.4 638 55.2
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 2.5e-153 546.6 635 63.0
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 3.3e-153 546.2 636 65.4
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.2e-152 544.3 434 70.7
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 1.6e-152 543.9 634 57.3
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.6e-152 543.9 435 72.6
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 1.6e-152 543.9 432 73.4
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 3.4e-150 536.2 431 71.5
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 5.8e-150 535.4 644 59.2
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 6.4e-149 531.9 635 59.8
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 1.4e-148 530.8 536 58.6
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 1.4e-148 530.8 630 67.0
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 3.2e-148 529.6 644 57.8
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 4.6e-147 525.8 335 80.9
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.3e-146 524.2 536 61.6
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.7e-146 523.9 637 58.2
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.3e-146 523.5 438 70.1
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 3.0e-146 523.1 551 61.7
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 1.1e-145 521.2 436 70.2
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 2.8e-144 516.5 455 63.7
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 6.2e-144 515.4 639 57.6
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 5.2e-143 512.3 433 67.0
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 1.2e-142 511.1 433 70.4
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 2.0e-142 510.4 435 66.4
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 5.8e-142 508.8 660 53.9
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 2.2e-141 506.9 631 61.8
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 3.5e-139 499.6 423 70.2
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 6.6e-138 495.4 649 59.8
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 1.5e-137 494.2 630 63.0
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 3.3e-137 493.0 399 72.7
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 2.1e-136 490.3 546 59.9
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 1.4e-135 487.6 636 57.4
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.8e-135 487.3 349 75.4
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 3.1e-135 486.5 428 68.2
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 4.0e-135 486.1 405 71.4
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 6.8e-135 485.3 630 62.7
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.6e-134 483.4 370 74.9
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 3.4e-134 483.0 655 48.5
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 3.8e-133 479.6 555 55.3
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 2.4e-132 476.9 333 77.2
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 9.3e-132 474.9 637 53.4
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 2.7e-131 473.4 473 60.3
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 2.5e-129 466.8 452 61.5
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 4.3e-129 466.1 545 53.9
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 6.2e-128 462.2 643 56.6
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 2.4e-127 460.3 458 59.4
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 3.4e-126 456.4 658 48.3
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.2e-123 448.0 675 47.4
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 2.5e-121 440.3 694 52.3
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 8.1e-120 435.3 475 55.6
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 5.3e-119 432.6 430 62.6
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 2.2e-117 427.2 310 73.2
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 2.1e-115 420.6 439 59.2
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 1.8e-114 417.5 461 54.7
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 3.0e-114 416.8 441 60.8
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 8.1e-112 408.7 433 60.3
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 1.4e-111 407.9 432 60.4
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 9.0e-111 405.2 432 60.2
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 1.5e-110 404.4 414 60.4
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 3.4e-110 403.3 432 60.0
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 7.6e-110 402.1 454 56.8
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 1.0e-109 401.7 541 47.7
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 2.2e-109 400.6 439 58.3
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 2.2e-109 400.6 465 52.9
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 3.8e-109 399.8 438 59.1
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.4e-108 397.9 469 52.7
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 4.6e-107 392.9 543 51.2
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.9e-105 387.5 319 65.2
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 1.9e-105 387.5 336 62.8
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 3.7e-104 383.3 627 43.2
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 1.8e-103 380.9 433 58.4
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.0e-101 375.2 314 72.9
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 1.6e-99 367.9 522 49.2
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 3.8e-93 346.7 338 57.7
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 2.7e-91 340.5 308 58.4
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 2.3e-90 337.4 308 57.5
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.0e-86 324.3 307 57.0
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.7e-85 321.2 239 67.4
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.7e-77 294.7 377 54.9
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.7e-77 294.7 377 55.2
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.7e-77 294.7 377 54.9
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.1e-76 292.0 377 54.6
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 6.1e-75 286.2 423 45.2
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 1.8e-74 284.6 395 45.6
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 2.4e-71 274.2 353 47.9
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.7e-69 268.1 418 42.6
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.0e-66 256.9 456 44.3
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 1.4e-58 231.9 266 63.2
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 3.0e-58 230.7 308 47.4
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 4.9e-56 223.4 300 46.0
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 3.0e-45 187.6 134 78.4
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 3.7e-40 170.6 103 78.6
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 2.7e-38 164.5 121 68.6
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.6e-33 147.9 532 32.3
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 1.6e-30 138.7 267 37.5
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 4.0e-26 124.0 235 34.5
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 6.8e-26 123.2 303 31.7
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.7e-24 118.6 339 45.1
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.7e-24 118.6 186 40.9
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 6.6e-21 106.7 66 74.2
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.8e-18 98.6 137 56.9
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 3.4e-17 94.4 59 79.7
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 1.4e-15 89.0 53 75.5
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 2.3e-13 81.6 76 53.9
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 1.1e-10 72.8 41 82.9
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 1.2e-09 69.3 62 61.3
Cpa.g.sc94.29 Carica papaya HOM05D004839 ORTHO05D006012 4.9e-08 63.9 38 78.9
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 2.4e-07 61.6 41 70.7
Ca_02964_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 5.4e-07 60.5 130 36.2
Actinidia21317 Actinidia chinensis HOM05D004839 ORTHO05D006012 4.6e-06 57.4 39 69.2


User provided reference genes

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