Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 1.2e-205 719.5 349 100.0
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 2.4e-201 705.3 347 98.8
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 6.6e-79 298.5 292 60.3
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 8.7e-79 298.1 147 97.3
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 2.1e-77 293.5 147 95.9
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 2.1e-77 293.5 147 95.9
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 2.1e-77 293.5 147 95.9
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 2.1e-77 293.5 147 95.9
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 2.1e-77 293.5 147 95.9
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 2.1e-77 293.5 147 95.9
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 8.1e-77 291.6 146 95.9
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 7.6e-75 285.0 146 93.8
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 1.6e-72 277.3 147 91.2
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 2.3e-71 273.5 148 89.9
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 1.6e-69 267.3 129 99.2
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 2.1e-69 266.9 138 92.8
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 4.8e-69 265.8 196 70.9
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 8.1e-69 265.0 127 100.0
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 1.2e-67 261.2 196 69.9
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 1.2e-67 261.2 196 69.9
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 2.6e-67 260.0 127 97.6
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 4.5e-67 259.2 127 97.6
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 4.5e-67 259.2 127 97.6
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-66 257.7 127 96.9
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-66 257.7 127 96.9
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-66 257.7 127 96.9
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-66 257.7 127 96.9
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-66 257.7 127 96.9
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-66 257.7 127 96.9
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-66 257.7 127 96.9
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-66 257.7 127 96.9
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-66 257.7 127 96.9
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-66 257.7 127 96.9
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.3e-66 257.7 127 96.9
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 1.3e-66 257.7 127 96.9
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 1.3e-66 257.7 127 96.9
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 2.2e-66 256.9 127 96.9
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 3.8e-66 256.1 127 96.9
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 4.9e-66 255.8 129 94.6
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 6.4e-66 255.4 127 96.1
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 6.4e-66 255.4 127 96.1
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 1.4e-65 254.2 127 94.5
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 1.4e-65 254.2 127 94.5
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 1.9e-65 253.8 201 66.7
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-65 253.4 127 96.1
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 2.1e-64 250.4 126 95.2
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 2.7e-64 250.0 125 96.0
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 1.8e-63 247.3 127 93.7
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 4.3e-62 242.7 127 92.1
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 2.1e-61 240.4 123 91.9
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 8.2e-61 238.4 119 96.6
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 8.2e-61 238.4 125 92.8
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 9.0e-60 235.0 126 88.1
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 1.5e-59 234.2 126 86.5
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 1.3e-58 231.1 126 84.9
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 1.7e-58 230.7 126 84.1
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 2.2e-58 230.3 125 89.6
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 1.9e-57 227.3 130 86.9
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 7.1e-57 225.3 117 93.2
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.6e-56 224.2 117 93.2
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 6.3e-53 212.2 116 87.1
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 1.6e-48 197.6 121 81.8
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 2.1e-48 197.2 104 91.3
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 2.7e-48 196.8 104 90.4
Lsat_1_v5_gn_6_95160 Lactuca sativa HOM05D004291 ORTHO05D005620 1.8e-47 194.1 118 83.1
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 1.9e-46 190.7 98 93.9
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 3.7e-45 186.4 94 95.7
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 6.3e-45 185.7 109 85.3
TAR022G0001 Trochodendron aralioides HOM05D004291 ORTHO05D005620 1.3e-42 177.9 126 65.1
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 1.4e-41 174.5 154 63.0
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 1.2e-40 171.4 84 96.4
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 1.4e-39 167.9 104 80.8
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 1.5e-38 164.5 86 90.7
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 7.4e-38 162.2 87 93.1
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 9.7e-38 161.8 82 91.5
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 5.3e-36 156.0 91 82.4
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 9.1e-36 155.2 87 82.8
Oeu042472.1 Olea europaea HOM05D004291 ORTHO05D005620 1.5e-35 154.5 104 69.2
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 3.4e-35 153.3 84 89.3
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.1e-30 138.3 72 90.3
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 2.6e-30 137.1 103 66.0
ATR0513G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 4.4e-30 136.3 75 88.0
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 1.3e-29 134.8 82 80.5
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 2.2e-29 134.0 90 77.8
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 2.2e-29 134.0 90 77.8
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 3.1e-28 130.2 78 83.3
Solyc09g015880.4 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-27 128.3 68 86.8
Nitab4.5_0000280g0210 Nicotiana tabacum HOM05D004291 ORTHO05D005620 4.5e-27 126.3 126 57.1
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 5.9e-27 125.9 67 92.5
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 5.0e-26 122.9 77 75.3
Cre01.g049500 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 8.5e-26 122.1 92 60.9
SMO053G0014 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 9.4e-25 118.6 113 54.9
ATR0461G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 2.1e-24 117.5 61 93.4
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 2.3e-23 114.0 56 96.4
CAN.G8.27 Capsicum annuum HOM05D004291 ORTHO05D005620 1.5e-22 111.3 57 87.7
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 2.2e-21 107.5 72 72.2
CAN.G15876.1 Capsicum annuum HOM05D004291 ORTHO05D005620 1.4e-20 104.8 71 63.4
Mapoly0041s0129 Marchantia polymorpha HOM05D004291 ORTHO05D005620 7.0e-20 102.4 55 80.0
CAN.G1449.6 Capsicum annuum HOM05D004291 ORTHO05D005620 1.2e-19 101.7 60 75.0
MELO3C030794.2 Cucumis melo HOM05D004291 ORTHO05D005620 5.0e-18 96.3 46 91.3
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 8.5e-18 95.5 45 93.3
Solyc05g045870.2 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.5e-17 94.7 57 78.9
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 1.0e-15 88.6 51 84.3
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 1.0e-15 88.6 42 92.9
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 1.0e-15 88.6 55 83.6
HanXRQChr00c0192g0572351 Helianthus annuus HOM05D004291 ORTHO05D005620 4.4e-14 83.2 71 64.8
PGSC0003DMG400020450 Solanum tuberosum HOM05D004291 ORTHO05D005620 6.3e-13 79.3 48 77.1
Nitab4.5_0000007g0310 Nicotiana tabacum HOM05D004291 ORTHO05D005620 2.0e-11 74.3 54 64.8
Peaxi162Scf00268g01210 Petunia axillaris HOM05D004291 ORTHO05D005620 2.7e-11 73.9 40 82.5
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.9e-10 70.5 87 43.7
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 3.8e-10 70.1 49 67.3
CAN.G595.5 Capsicum annuum HOM05D004291 ORTHO05D005620 2.5e-09 67.4 49 69.4
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 7.2e-09 65.9 106 38.7
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 2.6e-06 57.4 36 77.8


User provided reference genes

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